Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04470 ATGGAAGGTCGAGGAACTCGTTCCGTTGAAGAAATTTTTGAGGATTTCAAGAGCCGAAGAGCTGGAATCATCAAAGCCCTAACCACCGACGTTGAAGATTTCTACAGACAATGTGATCCTGAGAAGGAAAATCTGTGCTTATATGGATTACTGAATGAGAAGTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCACCAGAGCTTCCTGAACCTGTGCTGGGCATCAACTTTGCTAGGGATGGGATGCAAGAGAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTTCATTTGATAAAACTGACAGGAAACGTCTATTCAATTTGATTAATGAACTACCAACAGTATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTTAAAGAGAAGTCTTCTGTCTCAAACAACAGTGGCAGCAAGTCTAAGTCCAGTTCTAAAGCGCGGGCTCCTGAAACTCAGAGCAGACAACCAAAGGCGGCATTGCTGCCAAAAGATGAGGAGGAAGGACTGGAAGAGCATGAAGATGATGAACATGGAGAAGCCATGTGCGGGGCTTGCGGTGATAGTAATGGTGCTGATGAGTTCTGGATTTGCTGCGACATTTGTGAGAAATGGTTCCATGGCAAATGCGTGAAGATCACTCCTGCACGCGCAGAACATATCAAGCAGTACAAGTGCCCTTCATGCAGTAGTAACAAGAGAGCTCGCTAG 756 0.4418 MEGRGTRSVEEIFEDFKSRRAGIIKALTTDVEDFYRQCDPEKENLCLYGLLNEKWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFSFDKTDRKRLFNLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPETQSRQPKAALLPKDEEEGLEEHEDDEHGEAMCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04470 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Trre12g04470 251 MobiDBLite consensus disorder prediction 142 167 - -
Trre12g04470 251 FunFam PHD finger alfin-like protein 190 246 - -
Trre12g04470 251 CDD PHD_AL_plant 198 247 IPR044104 -
Trre12g04470 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Trre12g04470 251 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0006355|GO:0042393
Trre12g04470 251 Pfam PHD-finger 197 246 IPR019787 -
Trre12g04470 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Trre12g04470 251 MobiDBLite consensus disorder prediction 142 191 - -
Trre12g04470 251 SMART PHD_3 197 245 IPR001965 -
Trre12g04470 251 Pfam Alfin 8 136 IPR021998 GO:0006355|GO:0042393
Trre12g04470 251 SUPERFAMILY FYVE/PHD zinc finger 183 245 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04470 Trre-Chr12 59077761 59080986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04470 7 251 Alfin-like Transcription Factor Family AT3G42790 73.061 2.60e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre12g04470 Alfin 7.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04470 K26274 - gmx:100794662 366.311