Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04469 ATGGCATCAAACTCTGACCAGCTTCTTCACGGCCAGCTAATGGAAACTGCTCCTGTCCGAGTTCCCTTGCCATCTGATATGACAGAAGAACCCATATATGTGAATTCAAAGCAGTATCATGCTATTCTGAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACATAACAAACTCATCAAGGATCGTAAACCATATCTTCATGAGTCTCGCCATGTACATGCATTAAAGAGAGCTAGAGGTGCGGGTGGCCGCTTTCTAAATGCTAAAAAGCTCCAAGAATCAAAACAAATGTCACCAAATCATGGCCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGGAAATATGTCAGAATCTAAAATGCGTGATCAAGATGAAAACTACCGAGATGATGCTTCTGCATCGGATGTCACATATGCATCAAATAAGAATGAAATGTTCCAGCAGCAACAAGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAGACCGGAAGGAACATGCAGGATTATACAGCTGACAAGAGTGTTGGTGTGAATCAACGCCGACTATCGGTTCTCATGTGA 576 0.4219 MASNSDQLLHGQLMETAPVRVPLPSDMTEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKQMSPNHGQNVSTSYTCLNLNGNMSESKMRDQDENYRDDASASDVTYASNKNEMFQQQQELEFRLCSYPSSQTGRNMQDYTADKSVGVNQRRLSVLM 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04469 191 MobiDBLite consensus disorder prediction 116 135 - -
Trre12g04469 191 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 30 85 IPR001289 GO:0003700|GO:0006355
Trre12g04469 191 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 151 IPR001289 GO:0003700|GO:0006355
Trre12g04469 191 Gene3D - 28 89 - -
Trre12g04469 191 PRINTS CCAAT-binding transcription factor subunit B signature 62 85 IPR001289 GO:0003700|GO:0006355
Trre12g04469 191 PRINTS CCAAT-binding transcription factor subunit B signature 31 53 IPR001289 GO:0003700|GO:0006355
Trre12g04469 191 ProSiteProfiles NF-YA/HAP2 family profile. 28 88 IPR001289 GO:0003700|GO:0006355
Trre12g04469 191 SMART cbf3 27 88 IPR001289 GO:0003700|GO:0006355
Trre12g04469 191 ProSitePatterns NF-YA/HAP2 subunit signature. 33 53 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04469 Trre-Chr12 59069459 59070122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04469 19 171 CCAAT-HAP2 Transcription Factor Family AT1G17590 53.416 4.49e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre12g04469 CBFB_NFYA 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04469 K08064 - gmx:100500765 216.468