Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04468 ATGAAGTGCTTATGTGAGAAAGATTCTGCTCATTCAACATCCCACCATGTTTTTGGATGTCCGTCATGGGGAACTTCTTCTGAATCTGAAGTCCAACAAACATCCATGTCCAAAAGTTTGAGCTTCAAAGTGGAAGCTCTGCCACAAAAATGCCACAATAGTAAGGCGCTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGTCTGGCTCATCACAATCAGGTCAAATTCCTTTTCAGCACAGTTCTTCTACTGGTTCAACATTTAAGAGAACCGAGGAGAATAGTTTGGGATGTCTCATTGGGACTCCAAATCTCACCGTCCATCCTCCACTAGTGGATCACAGCCAATCACTTGCGCATATTGCATTCCACTTTGCTGATCCAGGCTACAATGGCCTACTTTCTGCTTCATATGCCCCACAATATAAGGTAATCTTGATGTTGCAGCTGGTACATCTTGTTTCATAA 480 0.4229 MKCLCEKDSAHSTSHHVFGCPSWGTSSESEVQQTSMSKSLSFKVEALPQKCHNSKALSFQFQEQDSSSTQSSGSSQSGQIPFQHSSSTGSTFKRTEENSLGCLIGTPNLTVHPPLVDHSQSLAHIAFHFADPGYNGLLSASYAPQYKVILMLQLVHLVS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04468 159 MobiDBLite consensus disorder prediction 60 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04468 Trre-Chr12 59068064 59069293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04468 2 145 CCAAT-HAP2 Transcription Factor Family AT1G72830 33.121 2.62e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04468 - K08064 gmx:100803893 142.895