Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04450 ATGATATTTCATCTGGACGTTGTTCTCAAAGAGAGTCGATGGAGTGAAGAAGAGTATGGTGCAGTTTTGGCCCCATGTGACATAATTAGCAATAAATTAGGAGATATTGTTCATATTGATGCTCGTCTCTTTGAGGGTGATTCTTTTAGTGTTGATCAATCAGCTCTAATCGGAGAATTTCTTCCCGCGGCAAAGAATCGCTCAGATGAAGTGTTTTCAGGATCAACAGTAAAAAAGGGTGAGATCGAAGCCGTTGTTATTGATAAGGTGAGCAACTTTATTGAAAAATGTGTTCACTCCAGTAGCAATAACAACTGTTTCGATATCACCCTTCTTCACAGTTGA 345 0.3913 MIFHLDVVLKESRWSEEEYGAVLAPCDIISNKLGDIVHIDARLFEGDSFSVDQSALIGEFLPAAKNRSDEVFSGSTVKKGEIEAVVIDKVSNFIEKCVHSSSNNNCFDITLLHS 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04450 114 PANTHER CALCIUM-TRANSPORTING ATPASE 8 89 - -
Trre12g04450 114 Gene3D - 8 89 - -
Trre12g04450 114 SUPERFAMILY Calcium ATPase, transduction domain A 23 87 IPR008250 -
Trre12g04450 114 Pfam E1-E2 ATPase 23 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04450 Trre-Chr12 58899299 58899643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04450 8 104 Primary Pumps ATPases AT2G07560 60.000 6.69e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04450 K01535 - gmx:100794372 110.923