Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04443 ATGGAATACCCGTTTTACCCTAAGGGAAGAGGAATTGGGTATTGGCAGTCTCCTGGAACTCAGTTGGAAGAATCAAGATCATTAGATGGTGGAATCAACAATTTGGTGTCAGAGGATATGCCTAGCAGCTTCTCTGAGCTCATGAACTTTGATACTTATGCTGGTTTGTGTTCTGGCCCATCCATGACTGATCAAATGATGGCCAATGAGCTTCCGTCTCTTGCCTCGGTATTATATCAATCGCCTGATGAATTCAATCTAGTAGAACAAAACACCGGACAATTCCATATGACAGGAGTCGGTGGAAATTACAATAATTCGGAAAACTCCCCCATTTTTGGGGAGAAAATTGTGCGTCAACAGATGGATAGCCTACTTGGTTTATTAGACAACAACAATGATGCAAATAGCTTAAGTTCTAAGCAAAAAATTAACGATTCTTTGCAGCATGTTAATACTTTTGACATGGACAATTGCATAATCTCCAAGCCAGCTTTGTCACTTGACGAGAGAATGCTGAAAGCCTTGTCCTTCTTTAAAGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCGTAATGCACGGTGGTCAAGTTTTCTTAACCACTAGTGAGCAACCTTATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTATCAAGGACATTTACATTTTCTACAGAAGGAAAACCAGGTTTTTTACCGGGACTTCCTGGCCGTGTGTTTATCTCTAAAGTTCCTGAGTGGACTTCGAATGTTGGTTACTACAGTCCAAGTGAGTATTTAAGGGTTGAGCATGCAAGAAATCATGATGTTCGTGGATCAATTGCGTTTCCCATATTTGATCTGCACTCTGGACTGCCTTGTTGTGCTGTCTTAGAACTTGTCACTACAAAGGAAAAACTTGATTTTGACAGAGAATTGGAAATTATTTGTCGTTCACTTCAGCTTGTAAATTTAAGGACTACGATGCCTTTTCGGCTACTTCCTGAGTGTCTTTCGAATAATAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTAAGATCTGTGTGTCATGCACATAGATTGCCACTGGCACTAACATGGATTCCCTGTTTTTACACCGAGGGCACAAGAGATGAAACTACTAGAATACAAATTAAAGAGGGTAATTCAAATTCTAGAGAAAAAAACATACTGTGTATCGAAGAATCAGCTTGCTATATAACTGATAGAGCGATGGAAGGATTTGTGCATGCATGCATTGAACATCCTCTTGAGGAAGGGAAAGGCGTAGCTGGGAAAGCACTTCAATCAAACCATCCTTTCTTCTATTCTGATGTGAAAACATATGATATTAGTGAGTATCCGCTTGTTCATCATGCACGCAAGTTCAATTTGAATGCTGCGGTTGCAATCAGGCTAAGGAGTACTTATACTAATAATGATGATTACATATTGGAATTCTTTCTGCCTATCAATATGAAGGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTCTCAGGCACTATGCAGAGAATTTGCAAGAGTTTGAGGACAGTTTCAGGTGCCGAACTATCAGAAATGGACAGCTCGCAGGCAGGATTTGAAAAGAACAGTGTCCCGAGTTTTCCCCCCTCGTCTAAGAGAAAGTCTCGAATACCATTTATAAATGAAAACCATGGTTCTGTCCAGAAGCCTTCGTCAAAGGCTTCTAACCTGAGAAACAATGGAAATGAGCCTTCTTCTAATCAGGAAAAAATTGGACCGAGAAGACGAGCTGAAAAAAGTAGAAGTTCATCCGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGCGTTTGCCCGACAACTCTGAAAAGGATATGCCGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTTGACTCTGTTGAGGGAGTTGAAGGTGGGTTGAAGTTTGATCCTTCCGTGGGGGCATTTGTGACAAAAGGGACAACCATCCAAGAAATTGATGAAAATAGAAGTCTCCTTTTCCCCGAGAAAAGTACTACAGAAGACTCTGAGCCTTTCTCACAAGATGCTGCCTCGGTGCCTCCTGCACATTATAGTGACGGTGAGAATTCAGCAAATAAGTTGGATGGAAAATTGAAGGAAACCAATGCATCTTTGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGGATGATTGTCCTGAACAAGCTTGTTTTGGTTCCGTTCTTGGAAAAGGTGACGAGTGGATTCTGAACAAGGGTGGTTTGAGAGAAGAAGAAAAATGTAAACATAATACTATTGGCCAGAGGACAAGTTCCTTTGTTGTTTATGAGATGGACACTGGTGTGGATGGCGATGATGAAGCTGTTGAGCACAACAATCCTGCTTCTTCAAGCTTGACAGGCTCGTCTAATAGCTCTGGTTCAATGGTACATGACAGTTCATCAGGTTACCAGAACCTTGAGAACCAAAAGCAGTCGAAAAGCAAATCAATCATCGTTGATAGTGGGTCAAAAATCGTTGTGAAAGCTACTTATGGAGAAGACACCATTCGCTTCAAGTTTGATCCAGCCACAGGTTGTTTAAAATTATACGAAGAAGTTGCATCAAGGTTCAAACTGCAAAACGGGACATTCCAGCTCAAATATCTAGACGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCAGATTTGCAAGAGTGTTTGGAAATATTGAATGATATGGGGACACGTAATGCAAGGTTTCTTGTTCGCGATACGCCTTGTACTTTTGGCAGTTCTGGTAGTAGCGGTTGCTACCTGGGAGGCGGCAGCTCATAG 2898 0.412 MEYPFYPKGRGIGYWQSPGTQLEESRSLDGGINNLVSEDMPSSFSELMNFDTYAGLCSGPSMTDQMMANELPSLASVLYQSPDEFNLVEQNTGQFHMTGVGGNYNNSENSPIFGEKIVRQQMDSLLGLLDNNNDANSLSSKQKINDSLQHVNTFDMDNCIISKPALSLDERMLKALSFFKESAGGGILAQVWVPVMHGGQVFLTTSEQPYLLDQMLAGYREVSRTFTFSTEGKPGFLPGLPGRVFISKVPEWTSNVGYYSPSEYLRVEHARNHDVRGSIAFPIFDLHSGLPCCAVLELVTTKEKLDFDRELEIICRSLQLVNLRTTMPFRLLPECLSNNKRAALTEIVDVLRSVCHAHRLPLALTWIPCFYTEGTRDETTRIQIKEGNSNSREKNILCIEESACYITDRAMEGFVHACIEHPLEEGKGVAGKALQSNHPFFYSDVKTYDISEYPLVHHARKFNLNAAVAIRLRSTYTNNDDYILEFFLPINMKGSSEQQLLLDNLSGTMQRICKSLRTVSGAELSEMDSSQAGFEKNSVPSFPPSSKRKSRIPFINENHGSVQKPSSKASNLRNNGNEPSSNQEKIGPRRRAEKSRSSSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVEGVEGGLKFDPSVGAFVTKGTTIQEIDENRSLLFPEKSTTEDSEPFSQDAASVPPAHYSDGENSANKLDGKLKETNASLIDCSEDSKSFAMDDCPEQACFGSVLGKGDEWILNKGGLREEEKCKHNTIGQRTSSFVVYEMDTGVDGDDEAVEHNNPASSSLTGSSNSSGSMVHDSSSGYQNLENQKQSKSKSIIVDSGSKIVVKATYGEDTIRFKFDPATGCLKLYEEVASRFKLQNGTFQLKYLDDEEEWVMLVNDSDLQECLEILNDMGTRNARFLVRDTPCTFGSSGSSGCYLGGGSS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04443 965 SUPERFAMILY CAD & PB1 domains 856 948 - -
Trre12g04443 965 MobiDBLite consensus disorder prediction 584 598 - -
Trre12g04443 965 MobiDBLite consensus disorder prediction 527 545 - -
Trre12g04443 965 SMART PB1_new 864 946 IPR000270 GO:0005515
Trre12g04443 965 MobiDBLite consensus disorder prediction 809 849 - -
Trre12g04443 965 MobiDBLite consensus disorder prediction 556 583 - -
Trre12g04443 965 PANTHER PROTEIN NLP8 132 957 IPR045012 GO:0003700
Trre12g04443 965 MobiDBLite consensus disorder prediction 817 849 - -
Trre12g04443 965 ProSiteProfiles PB1 domain profile. 864 946 IPR000270 GO:0005515
Trre12g04443 965 MobiDBLite consensus disorder prediction 701 728 - -
Trre12g04443 965 Pfam RWP-RK domain 602 650 IPR003035 -
Trre12g04443 965 CDD PB1_NLP 867 945 IPR034891 -
Trre12g04443 965 Gene3D - 860 945 - -
Trre12g04443 965 ProSiteProfiles RWP-RK domain profile. 582 670 IPR003035 -
Trre12g04443 965 Pfam PB1 domain 866 945 IPR000270 GO:0005515
Trre12g04443 965 MobiDBLite consensus disorder prediction 527 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04443 Trre-Chr12 58862849 58867957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04443 1 963 NLP Transcription Factor Family AT2G43500 47.702 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre12g04443 PB1 2.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04443 - - gmx:100804426 1310.43