Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04432 ATGGAGATAAGTCCTTATAGCACTTCAAAGAAAACAACACACATGAAGAAGTTGAACCATCAAAACAATAATTTTATTGTTCAAGAAGCTTCAACAATAGACATGATGCATACATCATCAAGCAATAATCATCAAACATCTTCAGATTCAAGTGAGACATGTCATCATGATCAAGATGGTAAATGGTCTTCCAAACTTCTCAAAGAGTGTGCAATAGCAATATCTAATAGAGATTCATCCAAAATCCATCATCTTCTTTGGATGTTAAATGAGTTATCTTCACCTTATGGAGATATTGATCAAAAACTAGCTTCATATTTTCTACAAGCTCTTTTTTCTAAGGCAACACAATCTGGTCACAAGTGTTACAAAACTCTCTCCTCAATTTCTCACAAAAACCATTCCTTTGATTCATCAAGAAAATTGATTCTCAAGTTTCAAGAGGTAAGTCCATGGACAACTTTTGGACATGTGGCATCAAATGGTGCTATTTTGGAAGCTTTAGAAGGAGAGAAAAAACTTCACATAATTGATATTAGCAATACACTTTGTACTCAATGGCCTACTCTTCTAGAAGCTTTAGCTACAAGAAATGATGAAACACCTCACCTTAAGCTCACAATTGTTGTCACAAATAATACTTCTAGTGTTGTTGTGATGAAGGAAGTTGGTCAAAGAATGGAGAAATTTGCTAGGTTAATGGGAGTACCTTTTGAATTGAATGTTATTAGTGGTTTGAAACATTTAAGGGAATTAACAAAAGAGAGATTAGGAGTTCAAGAAGATGAAGCAATAGCTTTGAATTGTGTTGGAGCATTGAGAAGAGTTGAAGTTGAAGAAAGAGAAAGTTTAATTCAATTTTTCAAATCTCTTAATCCTAGAGTTGTCACATTTGTTGAGGAAGAAGGTGATTTTGTTAGTAATGATTTTGTTAAATGTTTTGAAGAGTGTCTTAAGTTTTATACAATTTATTTTGAGATGTTGGAAGAAAGTTTTGCACCAACAAGTAATGAGAGGTTGATGTTAGAAAGGGAATGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGTGATCATGAATTTGATGATAATAATATTAATAATGATGATGATGAAGATGGTGGTGATGATTGTGAGAAAAGAGAAAAAGGAACACAATGGTTTGAAAGGCTTAAGAATGAATTTTCACCTAGTGGATTTAGTGATGATGTTGTGGATGATGTCGAAGCATTGCTAAAAAGGTATCAAAGTGGTTGGTCACTTGTTGTGCCTCAAGGAGATGATAATCAAACAGGAATTTATCTAAAATGGAAAGAGGAAGCAGTTGTTTGGGCATCAACATGGAAACCCTAG 1350 0.337 MEISPYSTSKKTTHMKKLNHQNNNFIVQEASTIDMMHTSSSNNHQTSSDSSETCHHDQDGKWSSKLLKECAIAISNRDSSKIHHLLWMLNELSSPYGDIDQKLASYFLQALFSKATQSGHKCYKTLSSISHKNHSFDSSRKLILKFQEVSPWTTFGHVASNGAILEALEGEKKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTIVVTNNTSSVVVMKEVGQRMEKFARLMGVPFELNVISGLKHLRELTKERLGVQEDEAIALNCVGALRRVEVEERESLIQFFKSLNPRVVTFVEEEGDFVSNDFVKCFEECLKFYTIYFEMLEESFAPTSNERLMLERECSRSIVRVLACDHEFDDNNINNDDDEDGGDDCEKREKGTQWFERLKNEFSPSGFSDDVVDDVEALLKRYQSGWSLVVPQGDDNQTGIYLKWKEEAVVWASTWKP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04432 449 Pfam GRAS domain family 65 448 IPR005202 -
Trre12g04432 449 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 438 IPR005202 -
Trre12g04432 449 ProSiteProfiles GRAS family profile. 54 448 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04432 Trre-Chr12 58794016 58795365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04432 59 449 GRAS Transcription Factor Family AT4G37650 50.976 1.45e-141 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre12g04432 GRAS 1.5e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04432 - - gmx:100818806 618.231