Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04427 ATGGAAAAGGACAAATCTTTGGGTCTTGGGGGTGGTTTTCCACCTCCATCAGGACGTTATTCGGGTTATTCACCTACTGGAAGTGGTTTCAATGTGAAATCTGAACCCTCACCGTCGGCGTATCCGCCACCTGTTCCTGGAACCAGCTCAGAATCTAGTGGCTTTAGTCATGATATTAGCAGAATGTCTGATAATCCTCCAAGAAATAGAGGTCATAGGCGTGCTCATTCCGAGATTCTTACCTTGCCTGATGATATTAGTTTCGATAGTGACCTCGGTGTAGTTGGTGGTGCTGATGGACCTTCATTCTCTGATGATACTGAGGAGGACTTGCTGTCTATGTATCTTGATATGGATAAGTTCAATTCGTCATCTGCAACGTCCACATTTCAAATGGGTGAGGGGTCTAATGCTGCGGCAGCATCAGGTTCCGCGCCAATGTCAGTAGGGAAGGCATCAGGAACAGGTACCTCTTCTGGGGAAAATATTGCCGGTGGTACTACTAATGAAAGACCCAGAATTAGACACCAGCACAGCCAATCTATGGATGGGTCGACAACCATCAAACCTGAGATGTTAGTTTCGGGTTCAGATGACATGTCTGCAGCTGATTCCAAGAAAGCAATGTCAGCAGCCAAGCTTGCAGAACTTGCCTTGATCGATCCCAAGCGTGCAAAAAGGATCTGGGCAAATAGGCAGTCTGCGGCAAGGTCAAAAGAGAGGAAGATGCGCTATATTGCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACAGAGGCCACATCTTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAGCGGACTGAATTCTGAGAACAGTGAGCTGAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAGGATGCTTTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAAGTATTGACTGGGCAAGCTATACCACCAAATGGAGGACCTATGATGAACTTTGCTTCTTTGGGAGGGGGACAGCAGTTCTATCCCAATAATAATCATGCCATGCACACTCTTTTAGCTGCACAACAGTTTCAACATCTCCAAATTCATCCTCAGAAGCAGCAGCAGCATCAGTTTCAGCAACAAATACAACAGCAACAGCAACAACAAATACAGCAGCAACAAATGCAGCAGCAGCAGCAGGAACAACAGCAACAGCAACAACAACAACAACAATCAGGCGACTTTAAAATGAGAGCAACTACACCTCCATGCCCCAATGATAATCCTTCATCAGATGCAAATCCTTCGGCGGCCAAGGATTGTTGA 1305 0.4552 MEKDKSLGLGGGFPPPSGRYSGYSPTGSGFNVKSEPSPSAYPPPVPGTSSESSGFSHDISRMSDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSTFQMGEGSNAAAASGSAPMSVGKASGTGTSSGENIAGGTTNERPRIRHQHSQSMDGSTTIKPEMLVSGSDDMSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTSGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAIPPNGGPMMNFASLGGGQQFYPNNNHAMHTLLAAQQFQHLQIHPQKQQQHQFQQQIQQQQQQQIQQQQMQQQQQEQQQQQQQQQQSGDFKMRATTPPCPNDNPSSDANPSAAKDC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04427 434 MobiDBLite consensus disorder prediction 136 166 - -
Trre12g04427 434 MobiDBLite consensus disorder prediction 136 188 - -
Trre12g04427 434 SUPERFAMILY Leucine zipper domain 223 274 IPR046347 GO:0003700|GO:0006355
Trre12g04427 434 MobiDBLite consensus disorder prediction 21 35 - -
Trre12g04427 434 FunFam probable transcription factor PosF21 222 275 - -
Trre12g04427 434 MobiDBLite consensus disorder prediction 46 62 - -
Trre12g04427 434 Coils Coil 239 308 - -
Trre12g04427 434 Gene3D - 222 285 - -
Trre12g04427 434 SMART brlzneu 219 283 IPR004827 GO:0003700|GO:0006355
Trre12g04427 434 CDD bZIP_plant_RF2 224 273 IPR044759 GO:0003700|GO:0006355
Trre12g04427 434 MobiDBLite consensus disorder prediction 386 428 - -
Trre12g04427 434 MobiDBLite consensus disorder prediction 63 80 - -
Trre12g04427 434 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 284 IPR004827 GO:0003700|GO:0006355
Trre12g04427 434 Pfam bZIP transcription factor 223 281 IPR004827 GO:0003700|GO:0006355
Trre12g04427 434 Coils Coil 376 405 - -
Trre12g04427 434 MobiDBLite consensus disorder prediction 1 82 - -
Trre12g04427 434 MobiDBLite consensus disorder prediction 386 434 - -
Trre12g04427 434 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 40 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04427 Trre-Chr12 58750748 58753876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04427 19 353 bZIP Transcription Factor Family AT1G06070 72.404 3.36e-166 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre12g04427 bZIP_1 2.3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04427 - - psat:127087280 590.497