Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04418 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCAGCTACAATGATTTGTTGTGCTGATGAAGCAGCTTTGTGTGCTAAATGTGACATTGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAACACCAAAGGCTTCATCTTCAATCTCTCTCTAGCAAGCTTCCTAGATGTGACATATGCCAAGATAAGGCAGCTTTCATATTTTGTATTGAAGACAGAGCACTCTTCTGTGAGGATTGTGATGATTCTATTCATTTAGCCGGTAGTCTTTCCGCAAACCACCAGCGCTTCCTTGCAACCGGTATCCGAGTGGCCATGAGTTCTAGTTGCGCCAAAGACGACGAAAAAACTCACTTGGAGCCACCTAATAGGAAGAACACAGAACAAGTTTCTCTTGAAACACCTTCTCAGCAAGTACCTGACTTTACACCCTCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGATTTTGATTCCCATGACAAAAAGGGATCCATGCAATTTGGAGAGATGGAATGGTTCACTGAGGATGGTCTTTTTGGTGAAGAATTTACTCAAGAAGCTATGGCTGCTGCTGAAGTGCCTCAGCTTCCAATGACTTATGCTAGCAACAATTTTTCATCACATAGAAATTCCAAGTCACACATGTCTAACAAAAAGCCTAGAATTGAACTCATACATGATTATAATTATGATGATGAAGATGAGTTGTTCACTGTGCCTGATCTTGGATGA 735 0.4136 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRLHLQSLSSKLPRCDICQDKAAFIFCIEDRALFCEDCDDSIHLAGSLSANHQRFLATGIRVAMSSSCAKDDEKTHLEPPNRKNTEQVSLETPSQQVPDFTPSWGVDDLLELADFDSHDKKGSMQFGEMEWFTEDGLFGEEFTQEAMAAAEVPQLPMTYASNNFSSHRNSKSHMSNKKPRIELIHDYNYDDEDELFTVPDLG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04418 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre12g04418 244 SMART bboxneu5 52 99 IPR000315 GO:0008270
Trre12g04418 244 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Trre12g04418 244 CDD Bbox1_BBX-like 5 47 - -
Trre12g04418 244 MobiDBLite consensus disorder prediction 124 139 - -
Trre12g04418 244 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Trre12g04418 244 CDD Bbox1_BBX-like 57 98 - -
Trre12g04418 244 Gene3D Classic Zinc Finger 1 95 - -
Trre12g04418 244 MobiDBLite consensus disorder prediction 113 139 - -
Trre12g04418 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
Trre12g04418 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04418 Trre-Chr12 58717616 58719197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04418 1 162 Orphan Transcription Factor Family AT1G06040 63.743 4.47e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g04418 zf-B_box 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04418 - - vun:114183169 380.948