Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04415 ATGTCTTCTAGATGCACTGAGAAGTTTCGTTTGAGGAAGATTAAGAACGATCAACTCAAGGTTGAGGCTAAGGCCAAGGGTGAGGTCATAAGCACCCAACGCAAGCCAGAGGGACCCAAACCTGGCTTCATGGTTGAAGGAGCTATACATTGGAAACAATACTCCAACCATACGATTACACAACACGAACTGAATCTTCTTTCATCTGCACGGAACCAACGAAACACAAAAAATTCAAATAAATTCAAATTAAATTTATTTATTTTCAAAATCACCAAATCTTCCAATTTGCGTCACTCTCATTTCTCATGGAGTTTGAGATTGATGATAACAGCAATGGCGAGCCAGTAG 351 0.3989 MSSRCTEKFRLRKIKNDQLKVEAKAKGEVISTQRKPEGPKPGFMVEGAIHWKQYSNHTITQHELNLLSSARNQRNTKNSNKFKLNLFIFKITKSSNLRHSHFSWSLRLMITAMASQ 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04415 116 PANTHER 60S RIBOSOMAL PROTEIN L21 2 49 IPR001147 GO:0003735|GO:0005840|GO:0006412
Trre12g04415 116 FunFam 60S ribosomal protein L21 3 60 - -
Trre12g04415 116 Gene3D - 3 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04415 Trre-Chr12 58702988 58704690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04415 3 47 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 73.333 1.13e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04415 K02889 - tcc:18599163 87.8113