Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04414 ATGACTCAAGATTCTTCTGGAGTGGACCAAATAGCGTCAGCAGTTCAACCAGTGTCGGTTGTGAGAATTGATGAACCCTATTTGGGTCAGGAGTTTGTATCGGAAGCTGAAGCCCATGCATTTTATAATGCATATGCTACACGTGTTGGATTCGTCATACGTGTTAGTAAGCTCTCAAGGTCAAGGCGTGATGGATCTGTTATTGGGCGGGCTCTTGTTTGTAACAAAGAAGGTTTCAGAATGCCTGACAAGCGGGAAAAGATTGTAAGACAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATAATGGTGAGGAAATTAAATTCTGGTTTGTGGTCTATAACAAAGTTTGTAAAGGAGCACACACATCCTCTGACACCTGGAAGAGGCAGACGGGACTTCGTTTATGAGCAATATCCGAGTGGACATGACAGAGTTCAAGAACTATCTCAGCAGTTGGCTCTAGAGAAAAATCGATCTGAAACCTATAAAAGGAATCTTGAATTGTTATATGAGTACATCGAAGAGCATAATGAAACCGTTTCAAAGAAGATACAGGAAATAGTAGAGAGTGTGAAGGAGATGGAAGCCAAAGAACAAGAGAATCCTAGATAG 618 0.4207 MTQDSSGVDQIASAVQPVSVVRIDEPYLGQEFVSEAEAHAFYNAYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQYPSGHDRVQELSQQLALEKNRSETYKRNLELLYEYIEEHNETVSKKIQEIVESVKEMEAKEQENPR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04414 205 Coils Coil 147 167 - -
Trre12g04414 205 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 200 - -
Trre12g04414 205 Coils Coil 179 199 - -
Trre12g04414 205 Pfam FAR1 DNA-binding domain 41 127 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04414 Trre-Chr12 58700819 58702886 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre12g04414 FAR1 1.2e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04414 - - qsu:112033516 323.939