Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04413 ATGGGAGAGGTTAGTAGCAGCATAGTAGACAAAGACATAGTTGACTGTAGTTCTTTGGATCCAACTGATGAACAGGATCTAGATGATAATATGACTCAAGATTCTTCTGGAGTGGACCAAATAGCGTCAGCAGTTCAACCAGTGTCGGTTGTGAGAATTGATGAACCCTATTTGGGTCAGGAGTTTGTATCGGAAGCTGAAGCCCATGCATTTTATAATGCATATGCTACACGTGTTGGATTCGTCATACGTGTTAGTAAGCTCTCAAGGTCAAGGCGTGATGGATCTGTTATTGGGCGGGCTCTTGTTTGTAACAAAGAAGGTTTCAGAATGCCTGACAAGCGGGAAAAGATTGTAAGACAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATAATGGTGAGGAAATTAAATTCTGGTTTGTGGTCTATAACAAAGTTTGTAAAGGAGCACACACATCCTCTGACACCTGGAAGAGGCAGACGGGACTTCGTTTATGAGCAATATCCGAGTGGACATGACAGAGTTCAAGAACTATCTCAGCAGTTGGCTCTAGAGAAAAATCGATCTGAAACCTATAAAAGGAATCTTGAATTGTTATATGAGTACATCGAAGAGCATAATGAAACCGTTTCAAAGAAGATACAGGAAATAGTAGAGAGTGTGAAGGAGATGGAAGCCAAAGAACAAGAGAATCCTAGATAG 708 0.4167 MGEVSSSIVDKDIVDCSSLDPTDEQDLDDNMTQDSSGVDQIASAVQPVSVVRIDEPYLGQEFVSEAEAHAFYNAYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQYPSGHDRVQELSQQLALEKNRSETYKRNLELLYEYIEEHNETVSKKIQEIVESVKEMEAKEQENPR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04413 235 MobiDBLite consensus disorder prediction 15 35 - -
Trre12g04413 235 Coils Coil 177 197 - -
Trre12g04413 235 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 9 230 - -
Trre12g04413 235 Pfam FAR1 DNA-binding domain 71 157 IPR004330 -
Trre12g04413 235 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04413 Trre-Chr12 58700819 58702976 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre12g04413 FAR1 1.7e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04413 - - gmx:100806900 342.043