Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04412 ATGGGGTTCTCTAAAAAACAATTCTTAAACTACCTTTTGAATACTATACTATTTAAGGTTGTTGTTTTTTCATGGTTATGGTTACAAGTTACTAGTCTTGGTTCCATGTCATCAATTGCTGTCTCTTATGGAGATAAAGGTTCTGCTTTCTGTGGTTTGAAATCAGATGGATCTCACACAGTTACATGTTATGGATTCAATTCAGCTATAGTTTATGGAACACCATCTCATTTTCCATTCATTGGTTTAACTTCTGGTGATGGTTTTGTTTGTGGACTTTTAATGAGTTCAAATCAACCATATTGTTGGGGGAGTAGTAGCCATATAGAAATGGGTGTACCACAACCTATGGTTAAAGATGCTCAGTACTTAGAAATTAGTGCCGGCGATTATCATGTTTGTGGATTGAGGAAACCTTTGACAGGAAGATACAGAAACATTTCTTATGTTGATTGTTGGGGCTACAACATGACAAAGAACTATGTTTTTGATGGACAGATTCAATCGATATCGGCAGGTTCGGAGTTCAATTGTGGACTTTTTTCGCAGAATCGGACGGTTTTTTGCTGGGGTGATGAGGTTAGTAGTCAAGTTATTAGGTTGATTCCACAAGGTATGAGGTTTCAGAAGGTGTCTTGTGGAGGGTATCATGTATGTGGAATTTTGGAAGGTGTGAATTCTAGAACTGTTTGTTGGGGTAGAAGCTTGGATATGGAGGAAGAAATTTCATTGATTCCTAATCAAGATAAAGGTGGTAATGTTGAGTTGGCACCAAATGATCCTATGCTTTCTGTTGTTGGAGGAAAGTTTCATGCTTGTGGCATTAAGAGCTATGATCATGGTGTGATTTGTTGGGGGTTAAGTTTGAAAACAAGTACAAAAGTTCCTAAAGGGATTAAAGTGTTTGAAATTGCAGCTGGTAATTATTTTACTTGTGGAATTCTTGCTGCAAAATCTCTTGAGCCTATTTGTTGGGGTGTTGGATTTCCAACTTCTGTTCCTTTGGCTGTTTCACCAAGAAAGTGTTTGTCTACACCTTGTTCTTCTGGTTACTATGAAATTGAAAAGGATCAACAAAAGGGTCTAATTTGTAAGGATCCAAATTCTCACCTTTGTGTTCCTTGCAGTAGTGTTTGTCCTGATGAAATGTATCAGAAAAGTGGTTGCAATTTGAAATCTGATATATTATGTCAATATAATTGTTCAGTTTGTTCTTCACCTGAATGCTTCTCAAATTGTTCTACCTCTTCTTCCAATGCTGCTAATGGGAAGAAAAATGAAAGATTTTGGTCTATGCAATTAATAGTTGTTGTTGCTGAGATAGTATTTGCTATTTTTATAGTTAGTGTTGTGTCTATAACCGCGGTTATGTACGTTCGCTACAAGCTAAGAGGTTGTGAGTGTTCAACAACAGCGTTAAACTCGGTGAAGAGACTGAATGTTAGTTCTTCGGTTCAAAAGGAGAACGGTAAGATTCGACCAGACGGAGAGGAGTTGAAGATAAGGAGGGCTCAGAAGTTCACCTATGAGGAACTTGAAAATGCAACTAGTGGATTCAAAGAAGAATCCATAGTTGGAAAAGGAAGTTTTTCATGTGTGTTCAAAGGTGTTCTCAAAGATGGAACAGTTGTTGCTGTTAAAAGGGCTATCATGTCTCCAAACATGCAGAAAAATTCTAAAGAATTTCACACTGAACTTGATTTGCTCTCTAGGTTGAACCATGCTCATTTGCTCAATCTATTAGGTTATTGCGAAGAAGGTGGTGAAAGACTACTAGTTTATGAGTACATGGCTCATGGATCATTGCATCAACACCTCCATGGCAAAAGTAAAGAGTTGAAAGAACAATTGGATTGGATCAGAAGGGTAACAATAGCGGTCCAAGCGGCTCGAGGAATCGAGTACTTGCATGGCTACGCGTGTCCGCCTGTGATACACAGAGATATCAAATCTTCAAACATACTCATTGATGAAGAACACAATGCTAGAGTTTCGGATTTCGGTCTGTCGTTACTAGGTCCAACAGATAGTAGCTCGCCATTGGCCGAGTTACCGGCCGGAACACTCGGTTATCTTGATCCAGAATACTATAGACTTCACTACCTCACAACAAAATCAGATGTTTATAGCTTTGGTGTTCTACTATTAGAAATCCTAAGTGGTAGAAAAGCTATTGACATGCAATATGAAGAAGGTAACATTGTTCAATGGTCAGTTCCATTAATAAAATCGGGCGATATAGCTTCGATTTTAGACCCTTGTTTGAAACAACCTTCTGATATTGAAGCATTGAAAAGGATAGCAAATGTTGCTTGTAAATGTGTGAGAATGAGAGGTAAAGATAGGCCTTCAATGGACAAAGTAACAACAAGTTTGGAAAGAGCTTTAGCAATGTTAATGGGAAGTCCTTGTATTGATCAACCAATATTACCAACTGAGGTTGTTTTAGGAAGTAATAGAATGCATAAGAAAACATCTCAAAGGTCTTCGAATAGGTCGGCTTCGGAAACCGATGGAGTTGAAGGTGAAGATCAAAGATTTGAGTTTAGAGCACCTTCTTGGATAACTTTTCCAAGTGTTACTTCTTCTCAAAGGAGAAAATCTTCAGGATCAGAATGTGATGTTGAAGTGAAGATTGTTGAAGGAAGAAATTATGGTAATGTTGTTGGTGGAGGTGGTGATGTTTTGAGAAGTCTTGAAGAAGAGATTGGTCCTGCTTCTCCTCAAGAGAGACTCTTCTTGCAACACAATTTCTAA 2757 0.3812 MGFSKKQFLNYLLNTILFKVVVFSWLWLQVTSLGSMSSIAVSYGDKGSAFCGLKSDGSHTVTCYGFNSAIVYGTPSHFPFIGLTSGDGFVCGLLMSSNQPYCWGSSSHIEMGVPQPMVKDAQYLEISAGDYHVCGLRKPLTGRYRNISYVDCWGYNMTKNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDEVSSQVIRLIPQGMRFQKVSCGGYHVCGILEGVNSRTVCWGRSLDMEEEISLIPNQDKGGNVELAPNDPMLSVVGGKFHACGIKSYDHGVICWGLSLKTSTKVPKGIKVFEIAAGNYFTCGILAAKSLEPICWGVGFPTSVPLAVSPRKCLSTPCSSGYYEIEKDQQKGLICKDPNSHLCVPCSSVCPDEMYQKSGCNLKSDILCQYNCSVCSSPECFSNCSTSSSNAANGKKNERFWSMQLIVVVAEIVFAIFIVSVVSITAVMYVRYKLRGCECSTTALNSVKRLNVSSSVQKENGKIRPDGEELKIRRAQKFTYEELENATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGKSKELKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWSVPLIKSGDIASILDPCLKQPSDIEALKRIANVACKCVRMRGKDRPSMDKVTTSLERALAMLMGSPCIDQPILPTEVVLGSNRMHKKTSQRSSNRSASETDGVEGEDQRFEFRAPSWITFPSVTSSQRRKSSGSECDVEVKIVEGRNYGNVVGGGGDVLRSLEEEIGPASPQERLFLQHNF 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04412 918 Gene3D Phosphorylase Kinase; domain 1 491 596 - -
Trre12g04412 918 FunFam serine/threonine-protein kinase-like protein CCR1 489 596 - -
Trre12g04412 918 SUPERFAMILY Protein kinase-like (PK-like) 501 792 IPR011009 -
Trre12g04412 918 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Trre12g04412 918 Gene3D Transferase(Phosphotransferase) domain 1 597 800 - -
Trre12g04412 918 SMART serkin_6 519 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04412 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Trre12g04412 918 FunFam Serine/threonine-protein kinase-like protein CR4 32 199 - -
Trre12g04412 918 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 346 397 IPR001368 GO:0005515
Trre12g04412 918 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 16 918 - -
Trre12g04412 918 CDD STKc_IRAK 525 794 - -
Trre12g04412 918 MobiDBLite consensus disorder prediction 819 836 - -
Trre12g04412 918 Gene3D - 84 377 IPR009091 -
Trre12g04412 918 FunFam Receptor protein kinase CRINKLY4 597 799 - -
Trre12g04412 918 MobiDBLite consensus disorder prediction 818 845 - -
Trre12g04412 918 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Trre12g04412 918 ProSiteProfiles Protein kinase domain profile. 519 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04412 918 SUPERFAMILY RCC1/BLIP-II 31 287 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04412 Trre-Chr12 58692892 58695648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04412 16 918 Receptor kinase-like Gene Family AT3G59420 67.767 0.0 1247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre12g04412 PK_Tyr_Ser-Thr 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04412 - - gmx:100809215 1468.75