LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g04403	ATGGCAGAAACCAGTGAGAAACATGACAAAGTAGATGGCAACATTTCAAACAATTTAGAATTATGTGCAGTTGAAGATGAAAGGTTTGTTGAACAACCTGTGGCAGATTCAGACATAATGGAACCATTCATAGGCATGGAGTTCAACACAAGAGAGGAAGCCAGAGAGTTCTACAATGCCTATGGTAGACGGATTGGATTTACAGTACGAGTACACCATAACCGCCGTTCACGAGTTAATAACGAGGTTATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGCTATCGAGCAAAGAAGTATGTCCACAGAAAAGATAGAGTGCTCCCTCCTCCACCACCCACCCGAGAAGGTTGTCAAGCCATGGTAAGGATGACTTTACAAGATGGAGGGAAGTGGGTTGTCACCAAATTTGAGAAGGAGCATACACATAAACTGATGAGTCCTAGTGAAGTTCCATGGCGAAGATCTGAGAAGCACCTGATTACTGAGGATGAGAAAGATAGGAGAATCCGTGCGCTATCACTTGAGTTGTACAACGAAAGGCAAAAGAACAAACGACGTTGTGCAGCATATGAAGAACAGATAAATATGATTCTGAATGATGTGGAAAGGCACACAGAACACATCTCTAAGAAAGTTGCTGATGTAGTTCGAAATATAAGAGAGATCGAGGAAGAAAAATCAGAGTCAAATGGAAGGTAA	702	0.4174	MAETSEKHDKVDGNISNNLELCAVEDERFVEQPVADSDIMEPFIGMEFNTREEAREFYNAYGRRIGFTVRVHHNRRSRVNNEVIGQDFVCSKEGYRAKKYVHRKDRVLPPPPPTREGCQAMVRMTLQDGGKWVVTKFEKEHTHKLMSPSEVPWRRSEKHLITEDEKDRRIRALSLELYNERQKNKRRCAAYEEQINMILNDVERHTEHISKKVADVVRNIREIEEEKSESNGR	233

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g04403	233	Pfam	FAR1 DNA-binding domain	56	146	IPR004330	-
	Trre12g04403	233	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	16	227	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g04403	Trre-Chr12	58645759	58646670	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Trre12g04403		FAR1	1.4e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g04403	-		-	gmx:100810283	374.015