Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04393 ATGGAAACCGCAACCACCCTCACCGGACTCCTCCAAGCCGTTGCCAAACAATTCCCTTCCCGACGTGCTATCTCCGTCGCCGGAAAACTCGATCTCACTCACTCTCACCTCAATCTATTAGTCGAATCCGCCGCTAATCATCTCATCTCCGTCGGTATCAAACCTAACGACGTCGTCGCTCTCACCTTCCCTAACACCGTCGAGTATGTTATACTATTTTTGGCTGTTATACGAGTACGAGCAACGGCGGCGCCGTTAAACGCGGCTTATACATCAGAAGAGTTTGAGTTTTATTTATCAGATTCTGAATCGAAGCTTCTATTAACGCCGTTAGAAGGTAACGAACCGGCTGAAGCTGCAGCTACAAAGCTCAAAATTCAACTCGGATCAGCTTCGCTCATTAAAACAATTGAAGAAGATGAAACTAAATTTTCATTTTCAATCTCGTTGAACAAATCCGAGTCAGAGTTAAATTCTGTTAACTCAGTTAACTCGGTTACTGAACTCATTAACGAACCATCCGACGTGTCACTTTTTCTCCACACATCAGGAACAACGAGTCGACCTAAGGGGGTCCCACTGAGTCAACACAACTTAGTTTCGTCAGTTAGAAACATTGAATCGGTTTATCGACTCAGTGAGTCAGACTCGACGGTTATTGTTCTTCCGCTTTTTCACGTTCACGGGTTAATTGCTGGATTACTGAGTTCACTTGGTGCCGGAGGTGCGGTGGCGTTACCATCGGCGGGAAGATTCTCGGCGTCGACATTTTGGAAAGATATGATTCAATACAATGCGACTTGGTATACTGCGGTTCCTACTATACATCAGATTATACTTGATCGTCATTTGAATAATCCTGAACCGGTTTACCCGAGACTCCGGTTTATTAGAAGCTGTAGCGCTTCCTTGGCACCGGTTATTCTAGGTCGTTTAGAGGATGCCTTTGGGGCACCAGTTTTGGATGCATATGCTATGACAGAGGCAACTCATTTGATGGCTTCAAATCCTTTGCCACAAGATGGGGCCCACAAAGCTGGGTCGGTTGGTAAACCAGTGGGTCAAGAAATGGCTATATTGGATGAATCGGGTCGGATTTTGGAGAATGAAGTTAATGGTGAAGTGTGTATTAGAGGAGAAAATGTTACAAAAGGGTATAAGAATAACGAGGAAGCTAATAAGGCAGCATTTTTGTTTGGCTGGTTTCATACTGGTGATATTGGTTACTTTGATTCTGATGGCTATTTGCATCTTGTGGGTCGGATTAAAGAGCTCATAAACAGAGGAGGAGAGAAAATATCACCAATAGAAGTGGATGCTGTTCTTCTATCTCATCCTGACGTAGCACAGGCAGTTGCTTTTGGAGTGCCAGATCAGAAATATGGTGAAGAGATACATTGTGCAGTCATACCAAGAGAAGGATTTAACATTGATGAGGCAGAGGTGCTAAGATTTTGCAAGAAGAATCTCACATCTTTTAAAGTCCCCAAAAAGGTTTTCATTACTGATTCTTTGCCAAAGACAGCTACCGGCAAGATCTTGCGTCGTCTGGTGGCAGAACAATTTGTCTCACAAGGTTGA 1581 0.4396 METATTLTGLLQAVAKQFPSRRAISVAGKLDLTHSHLNLLVESAANHLISVGIKPNDVVALTFPNTVEYVILFLAVIRVRATAAPLNAAYTSEEFEFYLSDSESKLLLTPLEGNEPAEAAATKLKIQLGSASLIKTIEEDETKFSFSISLNKSESELNSVNSVNSVTELINEPSDVSLFLHTSGTTSRPKGVPLSQHNLVSSVRNIESVYRLSESDSTVIVLPLFHVHGLIAGLLSSLGAGGAVALPSAGRFSASTFWKDMIQYNATWYTAVPTIHQIILDRHLNNPEPVYPRLRFIRSCSASLAPVILGRLEDAFGAPVLDAYAMTEATHLMASNPLPQDGAHKAGSVGKPVGQEMAILDESGRILENEVNGEVCIRGENVTKGYKNNEEANKAAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDVAQAVAFGVPDQKYGEEIHCAVIPREGFNIDEAEVLRFCKKNLTSFKVPKKVFITDSLPKTATGKILRRLVAEQFVSQG 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04393 526 PANTHER ACYL-COA SYNTHETASE 5 524 - -
Trre12g04393 526 Gene3D - 422 524 IPR045851 -
Trre12g04393 526 Gene3D - 1 421 IPR042099 -
Trre12g04393 526 Pfam AMP-binding enzyme 12 428 IPR000873 -
Trre12g04393 526 SUPERFAMILY Acetyl-CoA synthetase-like 5 524 - -
Trre12g04393 526 CDD FACL_fum10p_like 19 520 IPR045310 GO:0016874
Trre12g04393 526 FunFam 4-coumarate--CoA ligase 2 424 525 - -
Trre12g04393 526 Pfam AMP-binding enzyme C-terminal domain 437 512 IPR025110 -
Trre12g04393 526 ProSitePatterns Putative AMP-binding domain signature. 179 190 IPR020845 -
Trre12g04393 526 FunFam Peroxisomal-coenzyme A synthetase 6 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04393 Trre-Chr12 58567206 58578716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04393 5 525 Monolignol Biosynthesis Gene Families AT4G05160 29.609 1.91e-55 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04393 K22133 - gmx:100817853 813.527