Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04384 ATGGATTCCGAAGATGATATGCACGATGCCAACGATATTGAGTCTCTCGATGACGATTTCTACAGTGGTGAAACCGAAGATGTTCCTATGGATTACGGCAGCGACTATGATGATGATGATGATGCTGATGATTACTTTGATGATGGTGATGATTCTGACCCTGCCGAGTCTCGTCGAACCGAGCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACGGCAGGAAGATGATATCAGTAGAGTAGCAGCAGTTCTTTCCATACCGCAGGTTGCTGCAAGCATCCTACTTCGTCATTATAATTGGAGCGTCAGTAGGGTTAATGATGCTTGGTTTGCTGACGAAGGTGAAGTTCGAAGAACAGTTGGTTTGTTAGAGAAGCCAGTTTACGAGAATCCTGATGCTGAAGAGCTTACTTGTGGCATCTGTTTTGAAGATTACCCTCATTCTAAGATTCAAACGGCTTCTTGTGGTCATCCATTCTGTTTTACATGTTGGGGAGGATATATTGGGACTTCAATTAACGATGGTCCAGGATGCTTGATGCTGAGATGTCCTGATCCGGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGATCGTTACCTTCTCAGATCTTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTCGATGCTGGAACTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAAGAGGCTCACCGTCCAGTGGATTGTGGCACCGTGTCAAAGTGGATTCTAAAAAACAGTGCAGAGTCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGAGACCGATCGAAAAAAACCAAGGATGCATGCATATGACATGTACTCCACCCTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGACAGAACATGGTGAAAGGACCGGAGGGTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGGGTGTATGATGAAACTGAGAAAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGATGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACAACAGATGCAAACTGTTCATCTTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGACGCAGCTTAAGTTCATAACTGACGCCTGGTTACAGATAGTTGAGTGCAGGAGGGTATTGAAGTGGACATATGCATATGGATACTATTTACCCGATAACGAACATGCTAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTCCAAGTATTCCTCAGTGGTGATGAACCATCTAAAGAATTCAATGATTTTCGCACAAAACTAGCTGGATTGACCACTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGCAATGAAGCTGCTTCCAGCCAAGCAACAAGTTCAAAAATTGCTGCAGGGAGCAGTAAGGGAAAAGGCGGAAGAGGAAAGGGGACACCTAAAGCTAGCTTGTCCAGCAGAATAACCGATGATCATTGGTCATGTGAGCAATGTACCTATGCAAACGTCAAATCTGCCACCGCATGCCAGGTGTGCAATCATCAGCGTCGATGA 1776 0.4302 MDSEDDMHDANDIESLDDDFYSGETEDVPMDYGSDYDDDDDADDYFDDGDDSDPAESRRTEQSFTILKESDIRQRQEDDISRVAAVLSIPQVAASILLRHYNWSVSRVNDAWFADEGEVRRTVGLLEKPVYENPDAEELTCGICFEDYPHSKIQTASCGHPFCFTCWGGYIGTSINDGPGCLMLRCPDPACGAAVDQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDAGTGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWTEHGERTGGFYACNRYEAAKQEGVYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHLEKLSDTQCQPETQLKFITDAWLQIVECRRVLKWTYAYGYYLPDNEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLSGDEPSKEFNDFRTKLAGLTTVTRNYFENLVRALENGLCDVDSNEAASSQATSSKIAAGSSKGKGGRGKGTPKASLSSRITDDHWSCEQCTYANVKSATACQVCNHQRR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04384 591 CDD Rcat_RBR_ARI7-like 295 349 - -
Trre12g04384 591 Gene3D - 561 591 - -
Trre12g04384 591 CDD RING-HC_ARI6-like 138 199 - -
Trre12g04384 591 MobiDBLite consensus disorder prediction 532 559 - -
Trre12g04384 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 438 IPR031127 GO:0004842|GO:0016567
Trre12g04384 591 ProSiteProfiles Zinc finger RING-type profile. 141 185 IPR001841 -
Trre12g04384 591 ProSiteProfiles Zinc finger RanBP2 type profile. 563 591 IPR001876 -
Trre12g04384 591 SMART zf_4 565 589 IPR001876 -
Trre12g04384 591 MobiDBLite consensus disorder prediction 1 62 - -
Trre12g04384 591 FunFam RBR-type E3 ubiquitin transferase 135 224 - -
Trre12g04384 591 ProSitePatterns Zinc finger RanBP2-type signature. 567 586 IPR001876 -
Trre12g04384 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 221 IPR013083 -
Trre12g04384 591 ProSiteProfiles TRIAD supradomain profile. 137 350 IPR044066 -
Trre12g04384 591 SMART ibrneu5 210 272 IPR002867 GO:0008270
Trre12g04384 591 SMART ibrneu5 285 346 IPR002867 GO:0008270
Trre12g04384 591 SUPERFAMILY RING/U-box 210 279 - -
Trre12g04384 591 Pfam Ariadne domain 359 545 IPR045840 -
Trre12g04384 591 SUPERFAMILY Ran binding protein zinc finger-like 564 590 IPR036443 -
Trre12g04384 591 Gene3D - 268 523 - -
Trre12g04384 591 MobiDBLite consensus disorder prediction 1 51 - -
Trre12g04384 591 SUPERFAMILY RING/U-box 291 339 - -
Trre12g04384 591 Pfam IBR domain, a half RING-finger domain 289 336 IPR002867 GO:0008270
Trre12g04384 591 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 GO:0008270
Trre12g04384 591 CDD BRcat_RBR_ANKIB1 217 281 - -
Trre12g04384 591 SUPERFAMILY RING/U-box 136 222 - -
Trre12g04384 591 FunFam RBR-type E3 ubiquitin transferase 273 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04384 Trre-Chr12 58514967 58521793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04384 17 590 ARIADNE family AT1G65430 69.828 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04384 K11968 - gmx:100810427 1065.83