Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04370 ATGGAAATAGGAAATGATCCAGGTGCGAATGAAGCGACACTCCTCGGATTAGGGAAAGACAAGGGGAAGAAGAAGGAAGAAAGAAGCAACCGGCAAGTTCTTGGAGATATTGGTAATCTTGAAGGGAATCATGTTTCAAGACCCATCACAAGGAATTTCCATAAAAAATTATTGGAAAAAGCAGAAGCTGCAGCTAACTCGGCACCAGAATTAGAAGTCCCGGCTAATTATGACCAAGGAGTTGCACTAAGCAATCAAAATGTTGGTGATGATTGCGCTCAAAAGCCAAATCCTGAGGCTGTACATGTCGACAGTTCTGAAGCAGGAGAAAAACTTAATTTAGTTCCTAAAAAAGAGAGCAGTGGAAGATCTTCTAGGGAGGACCAGATTCTGAATTCGCCGCTTACTACAAAAAGCAAGATTGCTCGCGGATTGATTGAGCCCGAGGATCAGCCTGTTGACATGGATGCAGATGATGATATTAATAATTTAGCAGCAGATGAATATATCGATGAACTATACAATTTCTACAAGCTAACAGAAGAAGAAAATCGAGCTTCGGACTACATGGAATCACAGAAGGAAATCACCGCTAAGATGAGGACTATTGTCGTGGACTGGTTGGTTGAAGTTCATCATCATTTTAAATTGAAGACAGAAACACTCTTTCTTAACATTAACATAATTGATAGATACCTCTCATTGATTAATGTACCAAAAAAAGAGCTTCAGTTAGTGGCAATATGCTCAATGTCCTTAGCTTGCAAATATGAAGAAGTATCACATCCTAAGGTAAAGGATTTGTTGGATATATCAGATAAATTTTATAACAGAAGCCAATTTATTTCAAGGGAGAGAGATATTGTCGAAAAGCTTCAATGGAATTTTACAGTAACTACACCTTATGTATTTTTAGTTCGACTTATTAGAGCATCTATTGTTCAAGATAAAGAGATGGAGAACATGGCATTTTACCTAGCAGAACTTGGTCTTGCAAATTATTATGTCATGGTATTATTCTCGCATTCGCAGATTGCTGCAGCAGCTGTTTACTCCGCTCGTTGTATACTCAATAGGATTCAATATTGGAATCAGTATCTACAGAACCTTGCTGGTTACTCCAAAGAACAAATCAAAGATTGCGCGAAGCTATTAGTGAGGATATATGCAAGTGCAGCAGATGTTAAAACCAAATCAGTGTACAACAAATTCTCAAGTCCTAGGAAAGGTCACATTGCTCTTTTACCACAGCCACGTAACATCGAAGAAAGATTGTAG 1278 0.3834 MEIGNDPGANEATLLGLGKDKGKKKEERSNRQVLGDIGNLEGNHVSRPITRNFHKKLLEKAEAAANSAPELEVPANYDQGVALSNQNVGDDCAQKPNPEAVHVDSSEAGEKLNLVPKKESSGRSSREDQILNSPLTTKSKIARGLIEPEDQPVDMDADDDINNLAADEYIDELYNFYKLTEEENRASDYMESQKEITAKMRTIVVDWLVEVHHHFKLKTETLFLNINIIDRYLSLINVPKKELQLVAICSMSLACKYEEVSHPKVKDLLDISDKFYNRSQFISRERDIVEKLQWNFTVTTPYVFLVRLIRASIVQDKEMENMAFYLAELGLANYYVMVLFSHSQIAAAAVYSARCILNRIQYWNQYLQNLAGYSKEQIKDCAKLLVRIYASAADVKTKSVYNKFSSPRKGHIALLPQPRNIEERL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04370 425 Gene3D - 292 424 - -
Trre12g04370 425 Pfam Cyclin, N-terminal domain 174 296 IPR006671 -
Trre12g04370 425 Gene3D - 186 291 - -
Trre12g04370 425 SMART Cyclin_C_2 299 418 IPR004367 -
Trre12g04370 425 SUPERFAMILY Cyclin-like 300 419 IPR036915 -
Trre12g04370 425 MobiDBLite consensus disorder prediction 86 132 - -
Trre12g04370 425 PIRSF Cyclin_A_B_D_E 5 424 IPR046965 GO:0016538|GO:0044772
Trre12g04370 425 PANTHER CYCLINS 126 403 IPR039361 -
Trre12g04370 425 Pfam Cyclin, C-terminal domain 300 417 IPR004367 -
Trre12g04370 425 MobiDBLite consensus disorder prediction 111 125 - -
Trre12g04370 425 MobiDBLite consensus disorder prediction 17 32 - -
Trre12g04370 425 SUPERFAMILY Cyclin-like 164 296 IPR036915 -
Trre12g04370 425 MobiDBLite consensus disorder prediction 1 45 - -
Trre12g04370 425 SMART cyclin_7 303 387 IPR013763 -
Trre12g04370 425 SMART cyclin_7 206 290 IPR013763 -
Trre12g04370 425 FunFam G2/mitotic-specific cyclin 185 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04370 Trre-Chr12 58413812 58417595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04370 28 416 Core Cell Cycle Gene Families AT2G26760 39.898 2.39e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04370 K21777 - jre:109013760 356.295