Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04365 ATGGAGTCAGATCTTCATCAACAACAACATCCACAGGTAAATTCATCAGGTTTAACACGTTTCAAATCAGCACCAAGTTCATATTTCAACAACATAATTGATAGAGAATTTTATGAGCATGTTTTCAATCGACCTTCAAGTCCAGAAACAGAACGAGTTTTTTCAAGGTTTATGAACAGTTTAGGTTCAGAAGAAGATTTACTTACTCCAAAAATTTCAACTGAATCTACTGTTAAAGAAGAAGAAGTTATGGCTTCAATCAACAATGAACAAGTGGTTCATCAACAGATGATGCCACCTTTGCCAAATCAGAATGTTTCTTCTGGTTTAGATGGAAATTTTTCAATGGGAGTTAATAGGTTGCAACAGGTGAAGAATCATGGTGGAAATAATTCTAATCTTATTAGACATAGTAGTTCACCAGCTGGATTATTTTCTCAAATTAACATTGAAAATGGGTATGTTAGTATGAGAGGAATGGGAACATTAGGAGGTGTTAATAACAACTCTATAAAAGAAGCAAAATTTTCTAATGCAAGGAGTTTGAAGAATTCAACAAACTATTCATCAGGGATAATGTCAACAATAGCTGAAATTGGTGACAAAGATAATAGTGAAAATAATCAAGAAAGTGAAATTTTTGGTGAAAGTCATGGTAATGATTATAGTATGGATTATCAGGTTGATACTTGGGATGATTCTGAAATGATGTCTGAAAATGTTGGTGGTTTAAAAAGATTTAGAGATAATGATTCAAAACAACATTTTTCTGGTTTAAATGCAGCTCCACTTCAGAATGAAACAAGAGGAGGACATTCTTCATCTCCTTTGGCTCATCAATTGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATGGAGAACTTTCTTCATTTCTCAGATTCTGTTCCGATGAAAATTCGTGCTAAGCGAGGTTGTGCCACTCACCCAAGAAGCATAGCCGAAAGGGTTAGAAGGACTAAAATTAGTGAACGTATGAGGAAGCTTCAAGATCTTGTCCCAAACATGGATAAGCAAACAAACACAGCAGATATGTTGGACTTGGCTGTAGATTACATCAAAGACCTACAAAAGCAAGCTGAGAAGCTTCAAGATTGTCAAGCAAAGTGTACCTGTCCACACAAGCAACAACAATAA 1158 0.3515 MESDLHQQQHPQVNSSGLTRFKSAPSSYFNNIIDREFYEHVFNRPSSPETERVFSRFMNSLGSEEDLLTPKISTESTVKEEEVMASINNEQVVHQQMMPPLPNQNVSSGLDGNFSMGVNRLQQVKNHGGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGTLGGVNNNSIKEAKFSNARSLKNSTNYSSGIMSTIAEIGDKDNSENNQESEIFGESHGNDYSMDYQVDTWDDSEMMSENVGGLKRFRDNDSKQHFSGLNAAPLQNETRGGHSSSPLAHQLSMPNTSSEMAAMENFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAEKLQDCQAKCTCPHKQQQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04365 385 Pfam Helix-loop-helix DNA-binding domain 318 364 IPR011598 GO:0046983
Trre12g04365 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 363 IPR011598 GO:0046983
Trre12g04365 385 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g04365 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 377 IPR036638 GO:0046983
Trre12g04365 385 FunFam Transcription factor bHLH130 family 314 383 - -
Trre12g04365 385 SMART finulus 319 369 IPR011598 GO:0046983
Trre12g04365 385 Gene3D - 314 384 IPR036638 GO:0046983
Trre12g04365 385 MobiDBLite consensus disorder prediction 254 282 - -
Trre12g04365 385 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04365 Trre-Chr12 58389929 58393153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04365 5 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.547 4.39e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g04365 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04365 - - gmx:100805812 496.123