Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04364 ATGGATTCTTCTATTGTCATGGTTAACACAATTTCAGAACCTAATAATGAAATGGAATTTGAATCTCATGAAGTTGCATATACATTTTACAAAGAATATGCTAAATCTGTAGGGTTTGGTACTGCTAAGTTAAGTAGTCGTCGATCTAGGTCATCGAAGGAATTTATCGATGCTAAGTTTTCGTGTATAAGATATGGTAATAAGCAACAATCGGATGACGCGATTAATCCGCGTCCATCGCCGAAAATCGGTTGTAAAGCAAGTTTGCATGTGAAGAGAAGACAAGATGGTAAATGGTATGTTTATAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCTGCTCAAGCTCATTTCTTTCGAAGTCATAGGAATTCTGATCCGTTAAGTAATGATGTTCGGATGCGACGGAGGAAGAACTCAACTGCAGGTGGTAAATTGTTTAGTGCGTATCAGAATGTTGATTGTTTAGAGAATTTTATGAATCGTCAGCAGGATAAAGGGCGTAGTTTGGTTTTAGAACCAGGGAATGCTCAATTGCTTCTTGAATTATTCATGCATATGCAGGAAGAGAATCCTAAATTCTTTTATGCAGTTGATTTGAATGAAGAGCATCGACTTAGAAATGTGTTTTGGGTTGATTCTAAAGGGTTGGAAGATTTTGTTTATTTTTCTGATGTTGTTTCTTTTGACACAACATATTTCACAAGCAAGTATAAAATACCATTGGTGCTTTTCATTGGAGTTAACCATCATATACAACCAACATTGCTTGGATGTGCATTGATAGCTGATGAGTCGGTATTTACTTTTGCTTGGTTACTGCAAACATGGTTTATAGCAATGGGGGAACGTGCTCCACAAGTGATTCTGACTGACCAAAACGATGCTCTTAAAGCTGCTGTCGCTGCTGTTTTTCCAGAAACGCGTCATTGTTTTTGTTTGTGGCATGTTTTGGAAAAAATACCGAAACAACTTGAATTTTTAAGCACATGGCATGATAGCTTTATGGAAAAGTTTAACAAATGTATATATCAATCATGGACAGAGGACCAATTTGAAAAGAGATGGTGGAAGATGGTTGATAGGTTTAAACTTAGAGATATTAAGTGGGTCCAATCCTTGTATGATGATCGAGCAAGTTGGGTGCCAACTTTTATGAGGGATATTTCTTTTGCTGGCCTGTCTACTAGCTCGCGCTCAGAAAGTTTAAATTCTTTTTTTGATAAATATGTCCAAGTTGATACTTCATTGAGAGAATTTATAGAACAGTACCAACTGATTCTTGAAGATAGACATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTAAAGTCTCCTTCCCCTTTTGAAAAACAATTGTTGTTAGTTTATACACATGAAATCTATCAAAAGTTTCAGTTTGAGGTTTTGGGTGCTTCTGCTTGCCATCTAAAGAAAGAAAATGATGGCGTGATTACTACTTATGATGTGAAAGATTTTCAAAATAATCTGAACTACACGGTAGAATGGAACACATCAAACTCAGATATATGTTGTTCCTGTCACTTGTTTGAATATAAAGGTTACCTCTGTAGACATGCAATTGTTGTTCTACAAATGTCTGGTGTGTTTAGCATCCCGCCAAAGTATATATTGAAAAGATGGACAAATGCTGCTTTAAGTAGGTATCCTATTGGTGAAAAATTGGAAGAGGTTCAATCCAAGGTCCGGAGATTCAATGATTTATGCAGACGAGCCATAATATTGGGTGAAGAAGGTTCTTTATCCCAAGAAAGTTACTATATGGCTTTAGGTGCCTTAAGTGAAGCTCTAAAGCAATGTGCAAATTTGAACAACTCTGTTGAGAATGCAGCGTTAGCTACCCATGTTAGTTGCAATGATGAAGAAGATTATCATTCTATTACTACATCTAATGATAAGGTCTCTGATCCAAAAATGAATACGGGTAAGAAGGCTGCAAGGACTGGAGTGGCTGGTAGGAGTCTAGGAAGTGTTGAAAATATCGAAGGAAATAAAAGAAAGGTGCCTCAGCTTGGAGCAGTAAGTGGTAGCAACGATGGTTTTCAACAAATGGAGCGTACTGATCTTAGGTCGCATAATGCCATGCCAATGCAGTTTCACAGCATGGTGCCGGTAGCTATGTTCCATAATGTTTCGTCCCCCTTTCACACTGCAACCTCAACTCATTTGCATGACAATCATCTTCCTCCTTAG 2235 0.3749 MDSSIVMVNTISEPNNEMEFESHEVAYTFYKEYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASLHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRNSDPLSNDVRMRRRKNSTAGGKLFSAYQNVDCLENFMNRQQDKGRSLVLEPGNAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDSKGLEDFVYFSDVVSFDTTYFTSKYKIPLVLFIGVNHHIQPTLLGCALIADESVFTFAWLLQTWFIAMGERAPQVILTDQNDALKAAVAAVFPETRHCFCLWHVLEKIPKQLEFLSTWHDSFMEKFNKCIYQSWTEDQFEKRWWKMVDRFKLRDIKWVQSLYDDRASWVPTFMRDISFAGLSTSSRSESLNSFFDKYVQVDTSLREFIEQYQLILEDRHEEEAKANFDAWHETPELKSPSPFEKQLLLVYTHEIYQKFQFEVLGASACHLKKENDGVITTYDVKDFQNNLNYTVEWNTSNSDICCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILKRWTNAALSRYPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSQESYYMALGALSEALKQCANLNNSVENAALATHVSCNDEEDYHSITTSNDKVSDPKMNTGKKAARTGVAGRSLGSVENIEGNKRKVPQLGAVSGSNDGFQQMERTDLRSHNAMPMQFHSMVPVAMFHNVSSPFHTATSTHLHDNHLPP 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04364 744 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Trre12g04364 744 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 616 IPR031052 GO:0006355
Trre12g04364 744 Pfam MULE transposase domain 227 320 IPR018289 -
Trre12g04364 744 Pfam SWIM zinc finger 506 540 IPR007527 GO:0008270
Trre12g04364 744 Pfam FAR1 DNA-binding domain 28 114 IPR004330 -
Trre12g04364 744 Coils Coil 607 627 - -
Trre12g04364 744 SMART 26again6 517 544 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04364 Trre-Chr12 58371824 58374847 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre12g04364 MULE 3.9e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04364 - - gmx:100805273 1288.86