Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04362 ATGGATTCACCAACACCACCCAACAATATTGAACAAAACCTTAACCTCAACAACCTCAAACCACTCAAAATCTTAGGCAAAGGAGCAATGGGAACCGTTTTCCTCATTCAACAAAACAACAACAACAACAATATGGCACTCAAAGTAGTTGATAAATCCTCCACTCACGACGCCGAACGTCGCGCCCGTTGGGAAATCCAAGTCTTATCAACTCTAGCCCATCCATTTCTTCCCTCGCTCCTGGGCTCGTTTGAAACAGCTCAATTATTAGGTTGGGCTGTTCCTTACTGCCCAGGAGGGGATCTCAATGTGCTCCGTTACCACCAAACGGATCATGTCTTCTCAACAACAGTCATCCGTTTCTATATAGCAGAAATTCTCTGCGCTCTCGACCATCTTCATACCATGGGCATCGCTTATCGTGACCTTAAACCTGAAAACGTTCTTATTCAACAATCTGGCCACGTCACCTTAACTGATTTCGATCTTTCACGTAAACTCTCTCACAAAACTGTTAAAATTGAAACCGTCGATAACAGAATCAATGAATCTCGCCGCAAAACTCGGCGGTGGCGGGTCCCACTCACGGAGGCTAATGGAAAGATAGCGCGAGTTATTCCGGTGAGTCGACGCGGGGTGAGTTTCTCCGACGGTGAACGGTCTAACTCGTTTGTAGGTACGGCGGAGTACGTCGCGCCGGAGGTTATACGCGGCGACGGACATGAGTTCGCCGTTGATTGGTGGGCGTTTGGAGTTTTGACTTATGAGATGTTGTATGGGAAAACGCCGTTTAAGGGGAAGAATAAGAAGGAAACGTTTCGAAACGTGCTTTTCAAGTCGCCGGAGTTTGTTGGAAGAAAAACGGCGTTAACGGATTTGATCGAACGGTTGTTAGAGAAGGATCCGTTGAAGCGATTGGGTTATGGTGGTGGTGCTAGTGAGATTAAAGAGCATGAGTTTTTTAGAGGGGTAAAATGGGAAATGTTAACGGAGGTTGTACGACCGCCGTTTATTCCGTCAAAGGATGACGGTTATTTAACGGCGGATAAATTTGGTGAGGGAATAGTGAATATAACTGATTATTTTGAGAAGTTGAAATCTCCAGCGGTGTTGCCGTCTTCGCCGTTACGGTCACCGTCTTCTGAGTTTCGGGATAGTGTTTCTTTTGATGAGTTCTGA 1179 0.4614 MDSPTPPNNIEQNLNLNNLKPLKILGKGAMGTVFLIQQNNNNNNMALKVVDKSSTHDAERRARWEIQVLSTLAHPFLPSLLGSFETAQLLGWAVPYCPGGDLNVLRYHQTDHVFSTTVIRFYIAEILCALDHLHTMGIAYRDLKPENVLIQQSGHVTLTDFDLSRKLSHKTVKIETVDNRINESRRKTRRWRVPLTEANGKIARVIPVSRRGVSFSDGERSNSFVGTAEYVAPEVIRGDGHEFAVDWWAFGVLTYEMLYGKTPFKGKNKKETFRNVLFKSPEFVGRKTALTDLIERLLEKDPLKRLGYGGGASEIKEHEFFRGVKWEMLTEVVRPPFIPSKDDGYLTADKFGEGIVNITDYFEKLKSPAVLPSSPLRSPSSEFRDSVSFDEF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04362 392 ProSiteProfiles Protein kinase domain profile. 19 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04362 392 SMART serkin_6 19 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04362 392 FunFam Serine/threonine-protein kinase OXI1 219 340 - -
Trre12g04362 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Trre12g04362 392 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Trre12g04362 392 SUPERFAMILY Protein kinase-like (PK-like) 16 373 IPR011009 -
Trre12g04362 392 MobiDBLite consensus disorder prediction 371 392 - -
Trre12g04362 392 FunFam Serine/threonine-protein kinase OXI1 101 169 - -
Trre12g04362 392 Gene3D Transferase(Phosphotransferase) domain 1 218 340 - -
Trre12g04362 392 Gene3D Transferase(Phosphotransferase) domain 1 101 171 - -
Trre12g04362 392 Gene3D Phosphorylase Kinase; domain 1 19 100 - -
Trre12g04362 392 Pfam Protein kinase domain 22 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04362 392 Pfam Protein kinase domain 217 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04362 392 PANTHER FLIPPASE KINASE 1-RELATED 12 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04362 Trre-Chr12 58347782 58348960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04362 13 389 AGC Kinase Gene Family AT1G51170 58.333 4.17e-155 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre12g04362 Pkinase 2.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04362 - K08286 gmx:100785281 496.508