Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04356 ATGAACACAAACAACTGGCTTTCATTTCCACTTTCTCCAACTCATCCTTCTTCATTACCACCTCATCTTCAACCAACTCAATCTCAATATCATCACTTTTCTCTTGGAACATTAGTCAATGACAACATGTTGGAAACCCCTTTCCAAAATCATGATTGGAACCTAATGAGTACTAGTCACAGTCAGAGCAGCAATGAAGTTCCAAAGGTTGCTGATTTTCTTGGTGTGAGCAGCAAAATCAGTACTGAAAATGAGTCAGATCTTGCAGCCTTTGATCATTCTTCAGATAACAATTACTTATTCATGCCACCACTACATAATAACTCAGTTATAACAACTTCTAGCAACAGTTATGATCAATATCAAGAAAATGGTAACAATAATCTGCAATCATTGACATTATCAATGGGAAGTGGTACTACTACTAAGGAATCCATATGTGAAACCAGTGGTGACACTAACAGTGCAGTTGAAGCATCTGCTACACCTAAAAGAGCTTTGGATACCTTTGGCCAAAGAACATCTATATATCGAGGCGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGATAATACCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGGTGGATATGACAAAGAAGAGAAAGCAGCAAGGGCTTATGATTTAGCTGCACTGAAGTATTGGGGGACATCCACCACTACAAATTTTCCAATCAGTAACTATGAGAAGGAAGTTGAAGATATGAAGCACATGACTAGACAAGAATTTGTTGCCGCCATAAGAAGAAAGAGCAGTGGATTTTCAAGAGGTGCATCAATGTATCGTGGAGTGACAAGGCATCACCAACATGGAAGATGGCAAGCAAGAATTGGCAGAGTAGCAGGAAATAAAGATCTTTACTTAGGAACTTTCAGTACTGAAGAAGAGGCTGCAGAAGCTTATGACATAGCTGCAATTAAGTTCAGAGGATTAAACGCTGTAACAAACTTCGACATGAATCGTTACGACGTAAAAGCCATACTTGAAAGTAATACTCTTCCAATAGGAGGTGGTGCTGCAAAACGGTTAAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAAAGAGAACAAGAGATGATAGCATTAGGCTCTAGTACTACTTTTCAATATGGAGGAATAGGAGGAGAAGGATCTTCAAGTTCAAGTAGGATGCAATTACAAGGTTACCCTTTAATGCAATTTGAACCATTATATGAGAGTAGTATTCAAGATACGTCGTCGTTTAATCAGCAGAGTTATATTCAAACTCAGCTTCAGTTGCATCAACAACAGCAAAGTGGAGGATTTTATAATTATAATGGGAATTACAATATTCAGAATCAGCAGGGTTTGATGAATATGGGTATGATGGAGAATAATGGTGGTGGAGGAGGGTATATTGGGAATAATATTAATGTAGGTGGAAGTGGAGGGGAGGAAGTTGGGTTTGTTAAGGTTGATTATGACATGGGATCCGGAGGTTATGGAGGTTGGTCCGCGGCGGATGCTTCAAATGCCGCTGCAGCTGGTGTTTTTTCAGTGTGGAATGATTAG 1578 0.3942 MNTNNWLSFPLSPTHPSSLPPHLQPTQSQYHHFSLGTLVNDNMLETPFQNHDWNLMSTSHSQSSNEVPKVADFLGVSSKISTENESDLAAFDHSSDNNYLFMPPLHNNSVITTSSNSYDQYQENGNNNLQSLTLSMGSGTTTKESICETSGDTNSAVEASATPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREQEMIALGSSTTFQYGGIGGEGSSSSSRMQLQGYPLMQFEPLYESSIQDTSSFNQQSYIQTQLQLHQQQQSGGFYNYNGNYNIQNQQGLMNMGMMENNGGGGGYIGNNINVGGSGGEEVGFVKVDYDMGSGGYGGWSAADASNAAAAGVFSVWND 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04356 525 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 65 421 - -
Trre12g04356 525 SMART rav1_2 275 339 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 SMART rav1_2 176 245 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 FunFam AP2-like ethylene-responsive transcription factor ANT 175 241 - -
Trre12g04356 525 ProSiteProfiles AP2/ERF domain profile. 176 239 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 CDD AP2 274 333 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 PRINTS Ethylene responsive element binding protein signature 315 335 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 Pfam AP2 domain 276 325 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 Pfam AP2 domain 176 231 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 SUPERFAMILY DNA-binding domain 274 334 IPR016177 GO:0003677
Trre12g04356 525 FunFam AP2-like ethylene-responsive transcription factor 274 335 - -
Trre12g04356 525 Gene3D AP2/ERF domain 176 241 IPR036955 GO:0003700|GO:0006355
Trre12g04356 525 Gene3D AP2/ERF domain 275 335 IPR036955 GO:0003700|GO:0006355
Trre12g04356 525 CDD AP2 175 241 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 ProSiteProfiles AP2/ERF domain profile. 275 333 IPR001471 GO:0003700|GO:0006355
Trre12g04356 525 MobiDBLite consensus disorder prediction 1 25 - -
Trre12g04356 525 SUPERFAMILY DNA-binding domain 175 241 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04356 Trre-Chr12 58309008 58311966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04356 1 525 AP2-EREBP Transcription Factor Family AT3G20840 59.091 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre12g04356 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04356 K09285 - gmx:100788471 556.984