Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04349 ATGAGTACTCATCCCTACTTCTCCAATAACTTCAATAGTTATAATAATTATTTTGACCTAAATAACCCTCCATTCTATAATTTTCCTTCTAGTTATCATCAAAACAACATATCTTTTACATCTTCTCCTTCATCTCCACCTCCAAAAGAAGCACTTCCTTTACTTAACCTAAGCCCTACAAAACATGAAGATCTTCTTCTTCAAGAAACTTCCTTTAGTTGTTCTTCTTCCATGGAAATAATGAATATGAAAGAGAAAGAACAATTAAGCATATCATCAAATTCTTTAGAAGATGATGATGCTGTAACTGTGGCTTTGCATTTAGGGCTTCCAAGTATAAGTTCAGCTGATTTAGCTTCTTCAAATATGTATGTTGATTCAGAGAAAGATGATGAAAAAGTAGTAACTGTTGCTTCTTCTGAGTGTCCACTGAATAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTGATTGGTCCAACACAGTTTTCATGCCCTCTTTGTTTCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGAAAAGGACCAGAATCACTAAGAGGAACACAACCAACAGCTATGCTAAGACTTCCATGTTATTGTTGTGCACCTGAATGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTAAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAACCATTTATGTGTAGAAAATGTTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACACATGAGAAAAACTGTGGCAAACTTTGGTATTGTTGTTGTGGGTCCGATTTTAAGCACAAAAGATCACTAAAAGATCATATCAAGGCTTTTGGAAATGGACATAAAGCTTATGGAATTGATGAATGTCTTGATCAAGATGATGAACATGGTGGCTCTGAAATTGAGCAAGAAAATGAATCTTTTCAGTCATAG 996 0.3534 MSTHPYFSNNFNSYNNYFDLNNPPFYNFPSSYHQNNISFTSSPSSPPPKEALPLLNLSPTKHEDLLLQETSFSCSSSMEIMNMKEKEQLSISSNSLEDDDAVTVALHLGLPSISSADLASSNMYVDSEKDDEKVVTVASSECPLNKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPECKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDECLDQDDEHGGSEIEQENESFQS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04349 331 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Trre12g04349 331 Gene3D Classic Zinc Finger 166 189 - -
Trre12g04349 331 Coils Coil 328 331 - -
Trre12g04349 331 SUPERFAMILY beta-beta-alpha zinc fingers 233 271 IPR036236 -
Trre12g04349 331 PANTHER ZINC FINGER PROTEIN WIP2 22 329 IPR043584 GO:0003700|GO:0010468
Trre12g04349 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Trre12g04349 331 FunFam Zinc finger protein WIP2 220 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04349 Trre-Chr12 58251644 58254750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04349 49 331 C2H2 Transcription Factor Family AT3G57670 61.300 1.15e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04349 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04349 - - gmx:100789416 476.092