Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04347 ATGATGGCTGATAGGAGACACCAATATCCAACAGTAGCACAAAAGTTTGGTTCCCAATTTCATCTAAGATCCAACCTTTCTCCACATGTTGCAACTTCCTATGGAACTTTGGAACAGTTTTCATCCTCAAATGCATTGTTTGTTCCATCTCCATCAGAGAAAAACTTTGCAAGTTTTGCAACTGATTTTCTGATGGGTGGAGTTTCAGCAGCAGTGTCCAAATCTGCAGCCGCTCCTATTGAGCGCGTTAAGCTTTTGATTCAAAACCAAGATGAAATGATTAAGGCTGGTAGGCTTTCTGAACCTTACAAAGGTATTGGTGATTGTTTTGGAAGAACAATCAAAGATGAAGGATTTGCTTCGCTTTGGCGAGGAAATACTGTCAATGTTATCCGTTACTTCCCAACACAGGCATTCAACTTTGCATTCAAAGATTACTTTAAGAAGCTATTTAACTATAAGCAAGAGAGGGATGGATATTTGAAAGTGCTTGCAGGAAATATTGCATCTGGTGCTGCAGCAGGAGCTTCATCCTCCGTCTTTGTTTACTCGTTGGATTACGCACGAACTCGCCTTGCAAGTGACGCTAAAGCCACGAAGAAAGGGGGAGAGAGGCAATTCAATGGCTTGATTGATGTTTACAGAAAGACATTCCAATCAGATGGTATTGCCGGTCTTTATCGTGGCTTCAATGTTTCGATTGTTGGAATCATTGTCTACCGTGGTTTGTATTTTGGATTGTATGATTCTCTTAAGCCAGTGCTCTTGGTAGGAACATTCCAGGATAGTTTCCTTGCTAGCTTTGTTCTTGGATGGGCAGTTACAGTTGGTGCTAGTGTTGCATCTTACCCTTTAGACACTGTCCGTAGAAGAATGATGATGACATCGGGTGAAGCCGTAAAGTACAAAAGTTCTTTGGATGCTTTCTCACAAATTGTGAAAACTGAAGGTCCAAAATCTCTCTTCAAAGGTGCTGGTGCAAATATTCTTCGTGCAGTTGCTGGTGCTGGTGTGCTTGCAAGTTATGATAAACTTCAGGTGCTTATGTTGGGAAAGAAATATGGTTCTGGTGGAGCTTAA 1080 0.4148 MMADRRHQYPTVAQKFGSQFHLRSNLSPHVATSYGTLEQFSSSNALFVPSPSEKNFASFATDFLMGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFASLWRGNTVNVIRYFPTQAFNFAFKDYFKKLFNYKQERDGYLKVLAGNIASGAAAGASSSVFVYSLDYARTRLASDAKATKKGGERQFNGLIDVYRKTFQSDGIAGLYRGFNVSIVGIIVYRGLYFGLYDSLKPVLLVGTFQDSFLASFVLGWAVTVGASVASYPLDTVRRRMMMTSGEAVKYKSSLDAFSQIVKTEGPKSLFKGAGANILRAVAGAGVLASYDKLQVLMLGKKYGSGGA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04347 359 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 54 358 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre12g04347 359 Pfam Mitochondrial carrier protein 58 153 IPR018108 -
Trre12g04347 359 Pfam Mitochondrial carrier protein 262 350 IPR018108 -
Trre12g04347 359 Pfam Mitochondrial carrier protein 165 255 IPR018108 -
Trre12g04347 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 57 150 IPR018108 -
Trre12g04347 359 SUPERFAMILY Mitochondrial carrier 55 344 IPR023395 -
Trre12g04347 359 FunFam ADP,ATP carrier protein, mitochondrial 60 355 - -
Trre12g04347 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 262 348 IPR018108 -
Trre12g04347 359 PRINTS Mitochondrial carrier protein signature 125 145 IPR002067 GO:0055085
Trre12g04347 359 PRINTS Mitochondrial carrier protein signature 75 89 IPR002067 GO:0055085
Trre12g04347 359 PRINTS Mitochondrial carrier protein signature 271 293 IPR002067 GO:0055085
Trre12g04347 359 PRINTS Mitochondrial carrier protein signature 227 245 IPR002067 GO:0055085
Trre12g04347 359 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Trre12g04347 359 PRINTS Mitochondrial carrier protein signature 62 75 IPR002067 GO:0055085
Trre12g04347 359 PRINTS Adenine nucleotide translocator signature 267 283 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre12g04347 359 PRINTS Adenine nucleotide translocator signature 59 71 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre12g04347 359 PRINTS Adenine nucleotide translocator signature 103 124 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre12g04347 359 PRINTS Adenine nucleotide translocator signature 136 148 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre12g04347 359 PRINTS Adenine nucleotide translocator signature 162 175 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre12g04347 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 162 254 IPR018108 -
Trre12g04347 359 Gene3D Mitochondrial carrier domain 60 355 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04347 Trre-Chr12 58219082 58220577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04347 41 359 Antiporters AT5G13490 79.062 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04347 K05863 - gmx:100800843 550.436