Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04346 ATGGCCTTCTTTCAAACTTGTGTGACATACAATCTTAGTAACGGACAACTGCGTCAAAATCCAAGAGCCCTAATCGACGCCGATGGCAGTGGCAAAACTTGCGGCAGTTTGAATAAGGTTATTTCAACATCATGGCAGAACACTGAAGAGGAGGAGTTTGATTGGAAAGATATGCATGCTCTTCGTCCTTGTCCATTGAAGAATCCTGTTATGAATCCATCTGAATCAATAAATGTTGGTGTTGAGAACAATGATATCAGTAAAAGAAACCTGATGCATCAGTTACCTAATCAGCCAGCAGGTCTGATTTCTTCATCTAATCCACTATCAGTAAAACAAACACAACAATTGCAGTTTTCTCAGCATCCAGCAGCGGCAGCGTCGCAATTTAGTTATATGACCCCTTTGCAAGGACATGGTGCTTCCATAAGTAAACCCCTGTCACATGCACGCCCTGTGGTGCCACTTTTTCCTCCAGCCGGCGGCCTACATGCTCCGATCCAGATGCTACCTCATCCCAATTATACTAGTCCTTCTCTGTCAAGCCAACAACCATCTTTTGGATATTCTAATTTGATTAATTCACTCTTGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTAAACAGGATTTTGTTGGCATTGGCATTGAGTTTGATCCGGATATTCTGAAGGTTCGTCATGAATCTGTAGTGAGTGCCTTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGCCAACGATTCAAATCCAAAGACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTACTATGTCTAAAAACCGTAAGCAGAAATCTTCTCGCAAATGGTTTGTCAACGAGACGATGTGGTTTAAGGCATTGGGAACTGAATCATCTCCTCCAAGTTTTTTTCTAACAACTGAGGAAAAGAAAGAAGATGAAGAAGAGTTGGCGGTTCCTGCTGAAGAAGACCAGAATACATGTGCACTGTGTGGAGAGCATTTCGATAAGTTTTACAGCGATGAGACAGAGGAGTGGATGTACAGAGGAGGAGTTTATCTTAATGCGTCCAAATTAGGCCCAATTATTCATGCTAAATGCAGACCTGAATCAAAACGTATGCAGTGCTCATATGAAGAAGAAGGAAATAAAAAAAAAACGAATGCGCTATGGATAAGTAGACCGGTTTTGTTATAA 1197 0.4219 MAFFQTCVTYNLSNGQLRQNPRALIDADGSGKTCGSLNKVISTSWQNTEEEEFDWKDMHALRPCPLKNPVMNPSESINVGVENNDISKRNLMHQLPNQPAGLISSSNPLSVKQTQQLQFSQHPAAAASQFSYMTPLQGHGASISKPLSHARPVVPLFPPAGGLHAPIQMLPHPNYTSPSLSSQQPSFGYSNLINSLLAQGVISLANQAPKQDFVGIGIEFDPDILKVRHESVVSALYGDLPRQCTTCGQRFKSKDEHSSHMDWHVTKNRTMSKNRKQKSSRKWFVNETMWFKALGTESSPPSFFLTTEEKKEDEEELAVPAEEDQNTCALCGEHFDKFYSDETEEWMYRGGVYLNASKLGPIIHAKCRPESKRMQCSYEEEGNKKKTNALWISRPVLL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04346 398 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 94 374 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre12g04346 398 ProSitePatterns Zinc finger C2H2 type domain signature. 244 264 IPR013087 -
Trre12g04346 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 269 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04346 Trre-Chr12 58211475 58213432 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04346 11 58 C2H2 Transcription Factor Family AT4G04885 42.373 2.36e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04346 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04346 K14400 - tpra:123894024 359.762