Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04339 ATGGCCTTGTTTCAAACTTACAGTCTTAGTAACCGACAACGGCGTCAAAATCCAAGAGCCCTAATCGACGCCTATGGCAGTGACAGAACTTGTGGCAGTACTTTGAATAAGGTTATTTCAACATCATGGCAGAACACTGAAGAGCAGGAGTTTGATTGGAAAGATATGAATCGTCCACCAGTCTTGCCGGCACCTCGTCCTTGTCCATTGAAGAATCCTGTTAGGAATCCATCTGAATCAATAAATGTTGCTAATAGTACCATTGTGAGTCATGGTTTTCCAAATTTTGAGAACAATGATATCAGTAAAAGAAACCTGATGCATCAGTTACCTAATCAGCCAGCAGGTCAGTCGCAATTTAGTTTTATGAAAGTAAACCCTGTCACATGCCCTGTTGTGCCACTTTTTCCTCCACCCGGCGGCCTACATGCTCCGATCCAGATGCTACCTCATCCCAATTATACTAGTCCTTCTCTGTCAAGCCAACAACCATCTTTTGGATATTCTAATTTGATTAATTCACTCTTGGCCCATGGTGTAATCTCATTGGCTAATCAAGCCCCTAAACAGGATTTTGTTGGCATTGGCATTGAGTTTGATCCGGATATTCTCAAGGTTCGTCATGAATCTGTAGTGAGTGCCTTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGCCAACGATTCAAATCCAAAAACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTAGTATGTTTAAAAACTGTAAGCAGAAATCCTCTCGCAAATGGTTTGTCAACGAGACGATGTGGTTGAAGGCATTGGGAACTGAATCATCTCCTCCAAGTTTTTTTCTAACAATCGAGGAAAAGAAAGAAGATGAAGAAGAGTTGGTGGTTCCTGCTGAAGAAGACCAGAATACATGTGCACTGTGTGGAGAGCATTTCGACAAGTTTTACAGCGATGAGACAGAGGAGTGGATGTACAGAGGAGCAGTTTATCTTAATGCGTCCAAATTAGGCCCAATTATTCATGCTAAATGCAGATCTGAATCTACTACTACACGTGCATATGAAGAAGGCAATCAAAGAAAACGTATGCAGTGCTCATATGAAGAAGAAGAAGGAAATCAAATAAAACGAATGCGCGATAGATAA 1152 0.4175 MALFQTYSLSNRQRRQNPRALIDAYGSDRTCGSTLNKVISTSWQNTEEQEFDWKDMNRPPVLPAPRPCPLKNPVRNPSESINVANSTIVSHGFPNFENNDISKRNLMHQLPNQPAGQSQFSFMKVNPVTCPVVPLFPPPGGLHAPIQMLPHPNYTSPSLSSQQPSFGYSNLINSLLAHGVISLANQAPKQDFVGIGIEFDPDILKVRHESVVSALYGDLPRQCTTCGQRFKSKNEHSSHMDWHVTKNRSMFKNCKQKSSRKWFVNETMWLKALGTESSPPSFFLTIEEKKEDEEELVVPAEEDQNTCALCGEHFDKFYSDETEEWMYRGAVYLNASKLGPIIHAKCRSESTTTRAYEEGNQRKRMQCSYEEEEGNQIKRMRDR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04339 383 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Trre12g04339 383 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 104 355 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre12g04339 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04339 Trre-Chr12 58168636 58170694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04339 16 57 C2H2 Transcription Factor Family AT4G04885 51.923 2.73e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04339 None None None