Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04336 ATGGCAACAACCTATCACCAACCTGCTTCAATAGAAGAAGTTCGAACTCTATGGATTGGCGATTTACAATACTGGGTAGACGAAAACTACCTCACTCACTGTTTCTCCCATACCGGCGAAGTTATCTCAATCAAAATCATTCGTAACAAAATCACCGGTCAACCAGAAGGTTACGGTTTCGTCGAATTCGTATCACACGCCGCCGCTGAAAGAGTTCTTCAAAGTTACAACGGAACTCAAATGCCAGGTACCGAACAAACTTTCCGATTAAATTGGGCTTCTTTCGGTATCGGTGAACGCCGTCCTGATGCCGGTCCCGATCATTCGATTTTCGTTGGGGATCTTGCTCCTGATGTAACGGATTATCTTTTGCAAGAGACTTTTAGAACTCATTATAGTTCTGTTCGTGGTGCGAAAGTTGTTACGGATCCTAATACTGGTCGTAGTAAGGGTTATGGTTTTGTTAAATTTGCTGATGAGAGTGAACGGAATCGCGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGACCCATGAGGATTAGTGCTGCTACGCCCAAGAAGACTACTGCTTATCCGCAGAATCCTTATGCTGCTGTTGCTGTTGCTGCTGCTGTTGTTGCTCCTGCACCTGCTGCTCCTAAAGCAATATATCCAGTGCCAGCGTACACCGCCCCAGTGAATACAGTTCCACCAGAATATGACGTAAACAATACTACCATTTTTGTTGGTAATTTGGATCTTAATGTCTCAGAGGAGGAGCTCAAGCAAAACTTTCTGCAATTTGGAGAGATTGTTTCTGTCAAAGTACATGCCGGCAAAGCATGTGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATAATAGGTCAACAAGCGATTCGAGTTTCTTGGGGTAGGCCCCTAACAGCAAGACAGGACGTACCTGGTGCCTGGGGACAACAGGTGGATCAAAGTCAATGGAGTGCATACTATGGGTATGGACAGCCGGGTTATGAAGCTTATGCATATGGGGCTGCACAGGATCCTTCGATGTACGCATATGCTGGATATGCTGGCTATGCACAATACCCTCAACAGGTTGAAGGTGCGCAAGACGCATCAGCTATGTCTGTGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCTCTGGCAATGCCCGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAATGCCATTTTAGGGCGGTCCCTCTGGCACAAAAGTCATTCCTCATCCTTACAACAGCAAGCTTAG 1305 0.4567 MATTYHQPASIEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYSSVRGAKVVTDPNTGRSKGYGFVKFADESERNRAMSEMNGVYCSTRPMRISAATPKKTTAYPQNPYAAVAVAAAVVAPAPAAPKAIYPVPAYTAPVNTVPPEYDVNNTTIFVGNLDLNVSEEELKQNFLQFGEIVSVKVHAGKACGFVQFGARASAEEAIQKMQGKIIGQQAIRVSWGRPLTARQDVPGAWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYAGYAQYPQQVEGAQDASAMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKSHSSSLQQQA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04336 434 CDD RRM2_SECp43_like 107 186 - -
Trre12g04336 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 187 IPR000504 GO:0003723
Trre12g04336 434 SMART rrm1_1 109 183 IPR000504 GO:0003723
Trre12g04336 434 SMART rrm1_1 241 308 IPR000504 GO:0003723
Trre12g04336 434 SMART rrm1_1 16 91 IPR000504 GO:0003723
Trre12g04336 434 Gene3D - 227 318 IPR012677 -
Trre12g04336 434 Gene3D - 14 94 IPR012677 -
Trre12g04336 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 312 IPR000504 GO:0003723
Trre12g04336 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Trre12g04336 434 FunFam Polyadenylate-binding protein RBP47B 14 94 - -
Trre12g04336 434 FunFam Polyadenylate-binding protein RBP47B 96 198 - -
Trre12g04336 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Trre12g04336 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 306 IPR000504 GO:0003723
Trre12g04336 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Trre12g04336 434 Gene3D - 97 196 IPR012677 -
Trre12g04336 434 SUPERFAMILY RNA-binding domain, RBD 220 340 IPR035979 GO:0003676
Trre12g04336 434 CDD RRM1_SECp43_like 16 96 - -
Trre12g04336 434 SUPERFAMILY RNA-binding domain, RBD 100 197 IPR035979 GO:0003676
Trre12g04336 434 FunFam polyadenylate-binding protein RBP45 223 319 - -
Trre12g04336 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 315 - -
Trre12g04336 434 SUPERFAMILY RNA-binding domain, RBD 6 83 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04336 Trre-Chr12 58149099 58153384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04336 16 318 Eukaryotic Initiation Factors Gene Family AT1G22760 25.325 1.48e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04336 - - tpra:123894020 827.78