Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04330 ATGAGAAAGCCAGAGATTTCTAGTACTAAAAATAGCAACAATATTAATAAGAAGAAGCTTAGAAAAGGATTGTGGTCACCAGAAGAAGATGAGAAACTTATGAACTATATGGTAAGGAATGGACAAGGTTGTTGGAGTGATGTGGCAAGAAATGCTGGATTAGAAAGATGTGGCAAAAGTTGTAGACTAAGATGGATCAATTATTTGAGGCCTGATCTTAAAAGAGGTGCTTTCTCACAACAAGAAGAAGAACTCATCATTCATTTTCATACCCTTCTTGGAAACAGATGGTCTCAAATAGCAGCACGTTTGCCGGGAAGAACAGACAATGAAATAAAAAACTTTTGGAATTCAACCATAAAGAAAAGACTTAAGAACTTGTCTTCAACCTCACCAAATGCAAGTGATGAGTCCTTCCCTGAGCCTAACAAAGATCTCATACAAGGGTCCTATATTTCTACACAACAACATGCAAATTATAACAATTGCATGAATATGCCTATGTTCACCTCATCATCATCATCTCCATCCCCATCAATGTTGCAAAACACAATTTTCAATACCATGAACATTGGCACATTGCCTATGTTGGATCATGGTGGATACTTCAACAATGGAGTTGAAATTATTAAAGATTCTTATTTAGAAAATGGTGTGTTTGGGAGTGTAAATATTGGAGTACAAGAGGATGTGTGCAAGAGAGAAACTAACAATAGTGATTATTATTTTGGTGACATAAACATCAACACTATACTTAACAACTGCAATATTATTGAGAGTAGTAATAATAATAAAATTGAAAATAGGAGTGAGGTAGTGGAGAATTTATATCAAGAACAATTCAATTTAGGAGAGTTGGAGTTTGAGGAGTTGATGAAAGATGTTTCATCCTTTCTCTTTTCTTGA 906 0.3466 MRKPEISSTKNSNNINKKKLRKGLWSPEEDEKLMNYMVRNGQGCWSDVARNAGLERCGKSCRLRWINYLRPDLKRGAFSQQEEELIIHFHTLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTSPNASDESFPEPNKDLIQGSYISTQQHANYNNCMNMPMFTSSSSSPSPSMLQNTIFNTMNIGTLPMLDHGGYFNNGVEIIKDSYLENGVFGSVNIGVQEDVCKRETNNSDYYFGDININTILNNCNIIESSNNNKIENRSEVVENLYQEQFNLGELEFEELMKDVSSFLFS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04330 301 Gene3D - 76 144 - -
Trre12g04330 301 PANTHER MYB DOMAIN PROTEIN 55 15 265 - -
Trre12g04330 301 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g04330 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Trre12g04330 301 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Trre12g04330 301 CDD SANT 25 69 IPR001005 -
Trre12g04330 301 Gene3D - 22 74 - -
Trre12g04330 301 FunFam Transcription factor MYB46 76 145 - -
Trre12g04330 301 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Trre12g04330 301 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Trre12g04330 301 FunFam MYB transcription factor 19 75 - -
Trre12g04330 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Trre12g04330 301 SMART sant 74 122 IPR001005 -
Trre12g04330 301 SMART sant 21 71 IPR001005 -
Trre12g04330 301 CDD SANT 77 117 IPR001005 -
Trre12g04330 301 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Trre12g04330 301 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04330 Trre-Chr12 58112174 58114346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04330 1 130 MYB Transcription Factor Family AT5G12870 78.462 1.57e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g04330 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04330 K09422 - gmx:100785810 339.732