Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04324 ATGGGAGCTCATTGTTCTAAATTCTGCTTATGCTGCTTGCCCTCCAATACAAAATCCAATCTTCATCACTTGCTTGATCATGATGATGGGAACAAGGGTGATGAGAAGGATTCTTGTGGAGGTTTAACTGAGTTCAGCTTGGACCAATTAAATATTGCCACGTCAGGATTTTCACCAGACAACATTGTATCAGAACATGGTGAGAAAGCTCCTAATATTGTCTACAAAGGAACAATTGGAGATCACATGTTGGTTGCTGTGAAACGTTTCAACAAGTCTGCTTGGCCTGATTCACACCAATTCCTAGAGGAAGCACGAGAAGCGGGGAATCTAAGAAATGAGAGATTAGCTAACTTGGTTGGTTATTGCTGTGAAGGAGAAGAGAGATTGCTAGTTGCAGAGTTTATGCCTAATGAAACTCTCTCTAAACATCTATTTCACTGGGAGACTCAGCCTATGAAATGGGCAATGAGGTTGAGAGTGGCCTTGTATTTAGCACAAGCTTTGGAATACTGCAGCAATAGAGGAAAGACATTGTACCATGATCTTAATGCTGACAGAATTTTGTTTGATCAAGATGGCAACCCTAGATTGTCTTGTTTTGGACTAATAAAAAACAGCAGAGATGGTAGAAGTTACAGAAATTTATCTTTTGCCCCTCCAGAATATTCGAGGACAGGAAAAGTTACTCCTGAAAGTGTAATTTACAGTTTTGGAACACTTTTGCTTGATCTTCTGAGTGGAAAGCATATCCCACCCAGCCATGCACTTGACCTTATTCGTGCCAAAAAAACTCAGCTGTTAACGGACTCGTGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTATTGCGATTAGCTTCACGTTGTTTGCAGTATGAACCTCGCGAGAGACCAAATGCCAAGTCACTTGTGAATGCTCTAACTCCTCTTGAGAAAGAAACTTCAGTTTCATCACTTGTTTTATTGACCATACTGGATGAGAGTGAACCACCAAAGGAAAAAGTTCCATTGACACCATTTGGTGAAGCTTGTTCTAGAAAAGATCTCATTACAATACACAAAATTTTGGAGAGAGTGGGGTACAAGGATGATGAAGATGTTGCAAATGAGCTTTCTTTCCAAATGTGGACAGATCAATTACAAGGAACACTGAATTCAAAGAAACATGGAGATTCTGCTTTTCATGCAGGAGAATTCTCCAAGGCCATTGACTTTTATACACAATTCATCAATGGTGGGACTATGGTATCACCAACTGTGTATGCAAGGAGGTGCTTGTGTTACTTGATGAACAACATGACGCAAGAAGCGCTAGGAGACGCCATGCAAGCTCAATTAATATCACCCACCTGGCCGACCGCATTCTATCTTCAAGCAGTGGCCTTCTTCACCCTTGGGATGGACATTGATGCACATGAAAGCCTTAAAGAAGCCACAACATTGGAAACCGTAGCATAG 1467 0.4104 MGAHCSKFCLCCLPSNTKSNLHHLLDHDDGNKGDEKDSCGGLTEFSLDQLNIATSGFSPDNIVSEHGEKAPNIVYKGTIGDHMLVAVKRFNKSAWPDSHQFLEEAREAGNLRNERLANLVGYCCEGEERLLVAEFMPNETLSKHLFHWETQPMKWAMRLRVALYLAQALEYCSNRGKTLYHDLNADRILFDQDGNPRLSCFGLIKNSRDGRSYRNLSFAPPEYSRTGKVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRAKKTQLLTDSCLEGHFSNDDGTELLRLASRCLQYEPRERPNAKSLVNALTPLEKETSVSSLVLLTILDESEPPKEKVPLTPFGEACSRKDLITIHKILERVGYKDDEDVANELSFQMWTDQLQGTLNSKKHGDSAFHAGEFSKAIDFYTQFINGGTMVSPTVYARRCLCYLMNNMTQEALGDAMQAQLISPTWPTAFYLQAVAFFTLGMDIDAHESLKEATTLETVA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04324 488 SUPERFAMILY TPR-like 390 484 IPR011990 GO:0005515
Trre12g04324 488 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Trre12g04324 488 Gene3D Tetratricopeptide repeat domain 386 487 IPR011990 GO:0005515
Trre12g04324 488 FunFam probable serine/threonine-protein kinase At4g35230 32 135 - -
Trre12g04324 488 FunFam probable serine/threonine-protein kinase At4g35230 384 488 - -
Trre12g04324 488 ProSiteProfiles Protein kinase domain profile. 60 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04324 488 FunFam probable serine/threonine-protein kinase At5g41260 137 327 - -
Trre12g04324 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 23 486 IPR045845 GO:0004672|GO:0009742
Trre12g04324 488 Gene3D Transferase(Phosphotransferase) domain 1 137 327 - -
Trre12g04324 488 Pfam Protein tyrosine and serine/threonine kinase 74 310 IPR001245 GO:0004672|GO:0006468
Trre12g04324 488 SUPERFAMILY Protein kinase-like (PK-like) 40 314 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04324 Trre-Chr12 58069432 58072579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04324 14 310 Glycoside Hydrolase AT3G07070 31.402 1.63e-38 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Trre12g04324 PK_Tyr_Ser-Thr 1.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04324 - - gmx:732542 774.622