Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04308 ATGTTACTTTCTCTTCATCACTCTCACCAATTTCTTCAACCATCTTCATGTTTTCAAAACCAAAACCAAACAATTTGTTCAATTTCCATACCCAGTTGCAAAATCAGTCATAAAAGATTCATACATCAGCATGAGAACAAAGGAAGAGGTAGCAATAGAATCACGTTTGTTGTGAGAGCAAGGCGTGGTGAATCTCCATATGAAGTTTTGGGTTTGTCTCCTTCTGCATCTGTGAATGAAATCAAGAAAGCTTATCGAAAACTCGCTCTTAAGTATCATCCTGATGTTAATAAAGAGGATAACGCTCAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGTTAAATTCTAGTTCTCGCAAAAAATATGATTCTGGAAATCGTGGTTATAATTCATCTCAAAGAAGCCAAAGTCGGAATCCACAAGCTGAAGAAGAATTTTATGGATTAGGTAATTTTTTGAGAGATGCTCAAATAACAATAGGTAGTTATATACTCTCTGGAGATTTCTTTAAGGATCTTCAAGAAGAATTCAAGAATTGGGAAGCCAATGCAGCTTCACAAGGAAAGCCAAAGAGCCTATGGGAGGAATTGTCGGAAATAGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTCAATATTGTTGATCAAAATGACAATCCTCAAGGAGGAAATCGATCTAATTTATACGAGACAGAGACACGAAGCAACAATACTCAAGGCGAAGCTAGCAAGGGAAACACAAGCGTTGAGGATAACCTTGATGAAATAGAAGCCACTCTAGCACAGTTAAAAAAGGAGCTAGGCTTATAG 822 0.3662 MLLSLHHSHQFLQPSSCFQNQNQTICSISIPSCKISHKRFIHQHENKGRGSNRITFVVRARRGESPYEVLGLSPSASVNEIKKAYRKLALKYHPDVNKEDNAQEKFMRIKHAYNTLLNSSSRKKYDSGNRGYNSSQRSQSRNPQAEEEFYGLGNFLRDAQITIGSYILSGDFFKDLQEEFKNWEANAASQGKPKSLWEELSEIGEEFVEFLEKELNIVDQNDNPQGGNRSNLYETETRSNNTQGEASKGNTSVEDNLDEIEATLAQLKKELGL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04308 273 Coils Coil 250 270 - -
Trre12g04308 273 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
Trre12g04308 273 MobiDBLite consensus disorder prediction 120 145 - -
Trre12g04308 273 SUPERFAMILY Chaperone J-domain 55 125 IPR036869 -
Trre12g04308 273 Pfam DnaJ domain 66 126 IPR001623 -
Trre12g04308 273 Gene3D DnaJ domain 63 195 IPR036869 -
Trre12g04308 273 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 24 214 - -
Trre12g04308 273 SMART dnaj_3 64 121 IPR001623 -
Trre12g04308 273 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Trre12g04308 273 PRINTS DnaJ domain signature 85 100 IPR001623 -
Trre12g04308 273 PRINTS DnaJ domain signature 67 85 IPR001623 -
Trre12g04308 273 PRINTS DnaJ domain signature 101 121 IPR001623 -
Trre12g04308 273 MobiDBLite consensus disorder prediction 218 256 - -
Trre12g04308 273 CDD DnaJ 66 118 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04308 Trre-Chr12 57982108 57984922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04308 67 127 C2H2 Transcription Factor Family AT1G74250 41.791 1.04e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04308 - - gmx:100812972 370.548