Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04307 ATGCATGGATTAACAAATCTTTCTCTTCTTCCTAACATGTTACTTTCTCTTCATCACTCTCACCAATTTCTTCAACCATCTTCATGTTTTCAAAACCAAAACCAAACAATTTGTTCAATTTCCATACCCAGTTGCAAAATCAGTCATAAAAGATTCATACATCAGCATGAGAACAAAGGAAGAGGTAGCAATAGAATCACGTTTGTTGTGAGAGCAAGGCGTGGTGAATCTCCATATGAAGTTTTGGGTTTGTCTCCTTCTGCATCTGTGAATGAAATCAAGAAAGCTTATCGAAAACTCGCTCTTAAGTATCATCCTGATGTTAATAAAGAGGATAACGCTCAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGTTAAATTCTAGTTCTCGCAAAAAATATGATTCTGGAAATCGTGGTTATAATTCATCTCAAAGAAGCCAAAGTCGGAATCCACAAGCTGAAGAAGAATTTTATGGATTAGGAGATTTCTTTAAGGATCTTCAAGAAGAATTCAAGAATTGGGAAGCCAATGCAGCTTCACAAGGAAAGCCAAAGAGCCTATGGGAGGAATTGTCGGAAATAGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTCAATATTGTTGATCAAAATGACAATCCTCAAGGAGGAAATCGATCTAATTTATACGAGACAGAGACACGAAGCAACAATACTCAAGGCGAAGCTAGCAAGGGAAACACAAGCGTTGAGGATAACCTTGATGAAATAGAAGCCACTCTAGCACAGTTAAAAAAGGAGCTAGGCTTATAG 807 0.3693 MHGLTNLSLLPNMLLSLHHSHQFLQPSSCFQNQNQTICSISIPSCKISHKRFIHQHENKGRGSNRITFVVRARRGESPYEVLGLSPSASVNEIKKAYRKLALKYHPDVNKEDNAQEKFMRIKHAYNTLLNSSSRKKYDSGNRGYNSSQRSQSRNPQAEEEFYGLGDFFKDLQEEFKNWEANAASQGKPKSLWEELSEIGEEFVEFLEKELNIVDQNDNPQGGNRSNLYETETRSNNTQGEASKGNTSVEDNLDEIEATLAQLKKELGL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04307 268 Pfam DnaJ domain 78 138 IPR001623 -
Trre12g04307 268 MobiDBLite consensus disorder prediction 132 157 - -
Trre12g04307 268 FunFam Chaperone DnaJ-domain superfamily protein 74 184 - -
Trre12g04307 268 SMART dnaj_3 76 133 IPR001623 -
Trre12g04307 268 MobiDBLite consensus disorder prediction 213 251 - -
Trre12g04307 268 ProSitePatterns Nt-dnaJ domain signature. 118 137 IPR018253 -
Trre12g04307 268 CDD DnaJ 78 130 IPR001623 -
Trre12g04307 268 Gene3D DnaJ domain 75 184 IPR036869 -
Trre12g04307 268 Coils Coil 245 268 - -
Trre12g04307 268 SUPERFAMILY Chaperone J-domain 62 137 IPR036869 -
Trre12g04307 268 PRINTS DnaJ domain signature 113 133 IPR001623 -
Trre12g04307 268 PRINTS DnaJ domain signature 97 112 IPR001623 -
Trre12g04307 268 PRINTS DnaJ domain signature 79 97 IPR001623 -
Trre12g04307 268 ProSiteProfiles dnaJ domain profile. 77 141 IPR001623 -
Trre12g04307 268 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04307 Trre-Chr12 57982072 57984922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04307 79 139 C2H2 Transcription Factor Family AT1G74250 41.791 1.06e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04307 - - gmx:100793601 335.495