Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04302 ATGAACTCGGACACGTTACCTTCATCCACGGCGTCGTTTTGGTGCTATAGTTGCACTCGTTTCGTTCATCTCTTAGATCATAACGACGTCGTTTGTCCACACTGTCAAAACGGTTTCGTAGAAGAGATTCACGCTGGTAATTCTCCGGCGGTTTCACTTTTCGCCGACGGAATTCAAGCTTCCAGGAGACAAAATTCCCGCCGGAGACGTCGTAACGCTGGTGGAAGCCGCTCACCTTTTAATCCGGTAATTGTTCTCCGCGGACCTAGAGAAGATGGTGCCGGTGGTGGCGCCGGCGGAGTTGAAAACGAGGGGAGTAGCTTTGAATTATACTATGAAGACAGCAACGGTAACGGTAACGGCACCGATCTAAGACCACTCCCGCCGAATATGTCAGAGTTATTACTCGGTTCCGGATTCGATCGGTTGTTAGAGCAATTCTCTCAGATCGAAATCAACGGTTTCGGTAGAGCGGAGAATCCGCCGGCGTCAAAGGCGGCGATAGAATCAATACCAACGGTTGAGATCGCCGAAGCAGAAATAGAAGCCGAAACACACTGTGCGGTTTGTACAGAAGCTTTCCACCTTGGTTCGGAAGCGCGTAAGATGCCTTGTAAGCATCTTTATCATTCCGATTGCATTCTCCCATGGCTTTCGATGCGAAATTCATGTCCGGTATGCCGTCACGAGCTACCGTCCGATCAAAATCCTCCGGAGAGTTTAATACCCGGTCAGATCAACGAAGAATCAGTTGGATTGACGATATGGAGGTTACCGGGAGGTGGATTTGCGGTTGGGAGATTCGCCGGTGGTCGGAGAGCCGGCGAGATTCAGTTACCGGTAGTTTACACGGAGATGGATGGCAGTGGTAATACTAATGAATCAAACGAAGATTCTAGAAGATTCTCTATTGCAGTTGGAAGCAATAGAGTTAGAGAAAGACGTGGAATTCGAAGAATTTTTCGAAATTTCTTTTCCTTTTTTGGTAATGTTAATTTAAACCGTAGCTTATCTGGTTCATTGTTTAGTAGAAGCTCACGTAGTAGAAGAAGCAGAACTACTTGGGTTGAACATGAATGA 1080 0.4722 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCQNGFVEEIHAGNSPAVSLFADGIQASRRQNSRRRRRNAGGSRSPFNPVIVLRGPREDGAGGGAGGVENEGSSFELYYEDSNGNGNGTDLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVEIAEAEIEAETHCAVCTEAFHLGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNPPESLIPGQINEESVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPVVYTEMDGSGNTNESNEDSRRFSIAVGSNRVRERRGIRRIFRNFFSFFGNVNLNRSLSGSLFSRSSRSRRSRTTWVEHE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04302 359 SMART ring_2 187 227 IPR001841 -
Trre12g04302 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 58 232 - -
Trre12g04302 359 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Trre12g04302 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Trre12g04302 359 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Trre12g04302 359 Pfam Ring finger domain 186 228 IPR001841 -
Trre12g04302 359 SUPERFAMILY RING/U-box 167 234 - -
Trre12g04302 359 MobiDBLite consensus disorder prediction 57 100 - -
Trre12g04302 359 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Trre12g04302 359 Pfam Protein of unknown function (DUF1117) 251 350 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04302 Trre-Chr12 57923197 57924276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04302 123 239 C3H Transcription Factor Family AT5G01980 44.444 3.36e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04302 K11982 - gmx:100804867 375.555