Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04297 ATGCTTTCTCCGAACGCCTTTCTGCAAGATTTCTGTGTGCCTGACACAGTAAACCCGATAACAAATGGATTTGAGTTGGAAGATTCATCATCATCATCACCTTCTTCTGTCACAAGCTCAAATGGAGAATTCACAAAAGGGACAAGATATTCCAATAACATCCTCAGATACATAAGTGATATCCTCATGGATGAAGAAGATGACTTGGAGCTTAAACCTTGTATGTTGCAGGAATGTTTAAGACTCCAAGCTGCTGAAAAATCATTCTATGATGTTCTTGGTCACAACTATCATAATTCATCATGTGAAAATTCCACCGACACAGACGGAGATTCCGGTCGCACTGCTAGTTTTGAGAGCAATAGCAGCAGCTGCTCCACTGATAACTCATATGAGTCTGATTGGGTCAACCATGGTGGCAAATTCGACTGTTCTTCCTTACAACTACAAACCCATGTAGTGACAGAAGCTGCTAACGATATTCACAATGGAAGTTGGAATGCCATTCAGCCAGGGATGGTGGAAGATTTTTCAGCTTCAGTAGTACCAAGAGAAAAGAGAAGTCATAAGATGAACGGTGATGATACTTGCAATGAACAAGAGGGAAGAGGTAGCAAGCTTCCAGCTATCTTCTCCGATGAATTAGAGCCACCAGAGATCTTAGATGAGGTACTGCTTTGTCAGGCAGGAAGGATACAAAACCAACAAGCATCACATAATGTCAATTCAGGAGGGAAGGCAAAGGGAAAGGGTTCACGTTCGAAGAAAGTATCTACTACTAACAATGCCCCAGCTGTGGATTTCTGGACTATGCTAACTCAATGTGCACAGGCCGTGGCGACCTACGATCAAAGGAATGCAAATGAGCTACTCAAGCAGATTAGGCAACATTCTTCGCCTTCCGGCGATGGACTCCAGCGTTTAGCTCATTACTTTGCCAATGGTCTTGAGATAAGATTGGCTGCCGAGACACCATCGTATAAGCCACTTGATCTGGCTACAGCTGGAGATATGTTGAAAGCTTACAAACTATTCATTACCTCATCTCCTTTGCAGAGAATGACGAATATGTTTTTAACCAATACGATATTCAGACTAGTGAAGAATGAGAGCAGCGTTCATATTATCGACTTTGGAATTTGCTATGGTTTCCAATGGCCTTGCCTTATCAAAAAACTTTCATCAAGACCCGGTGGTCCTCCAAAGCTTCGAATTACGGGAATTGATCTCCCTCGGGCCGGATTTAGGCCTGCAGAGAGGGTCGAGGAAACTGGACGGCGTTTAGAAAACTACTGCAAGAAGTTCAATGTACCATTTGAATACAACTGCATTGCACATAAATGGGAAACTATCCGGCTCGAGGATCTAAAGATAGACAGGAATGAAATAACAGTTGTTAGTTGTTTATACAGACTGAAGAACATGCCTGATGAAACTGTAGCAGTGAATTGTCCAAGAGAAGCTTTGTTAAAGCTGATCAGGAAGATTAATCCAAAAATCTTCTTCCATGGTGTTGTCAATGGAAGTTACAGTGCACCGTTTTTTCTAACTCGGTTTAGGGAAGCACTATACCACTTCTCATCATTGTTTGATATGTTTGAGGCTAATGTGCCTCGTGAAGATACACAGAGGTTAATGCTTGAGAGAGAGTTGTTTGGAAGGGATGCCATAAATGTTATAGCTTGTGAAGGTGCAGAGAGAGTTGAAAGGCCTGAGACCTACAAGCAGTGGCAGCTCAGGAACAGGAGAGCCGGATTCAAACAAATCAGGTTTGATTCTGACTTGGTGAATGATACCAAAGTAATGGTGAAGAGGGAATACCATAAAGATTTTGCAGTTGATGAAGATGGTAAGTGGGTTTTGCACGGATGGAAGGGACGTGTTTTGAATGCTTTATCTGCTTGGGTTCCTGCTTAA 1917 0.4246 MLSPNAFLQDFCVPDTVNPITNGFELEDSSSSSPSSVTSSNGEFTKGTRYSNNILRYISDILMDEEDDLELKPCMLQECLRLQAAEKSFYDVLGHNYHNSSCENSTDTDGDSGRTASFESNSSSCSTDNSYESDWVNHGGKFDCSSLQLQTHVVTEAANDIHNGSWNAIQPGMVEDFSASVVPREKRSHKMNGDDTCNEQEGRGSKLPAIFSDELEPPEILDEVLLCQAGRIQNQQASHNVNSGGKAKGKGSRSKKVSTTNNAPAVDFWTMLTQCAQAVATYDQRNANELLKQIRQHSSPSGDGLQRLAHYFANGLEIRLAAETPSYKPLDLATAGDMLKAYKLFITSSPLQRMTNMFLTNTIFRLVKNESSVHIIDFGICYGFQWPCLIKKLSSRPGGPPKLRITGIDLPRAGFRPAERVEETGRRLENYCKKFNVPFEYNCIAHKWETIRLEDLKIDRNEITVVSCLYRLKNMPDETVAVNCPREALLKLIRKINPKIFFHGVVNGSYSAPFFLTRFREALYHFSSLFDMFEANVPREDTQRLMLERELFGRDAINVIACEGAERVERPETYKQWQLRNRRAGFKQIRFDSDLVNDTKVMVKREYHKDFAVDEDGKWVLHGWKGRVLNALSAWVPA 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04297 638 MobiDBLite consensus disorder prediction 184 204 - -
Trre12g04297 638 ProSiteProfiles GRAS family profile. 259 636 IPR005202 -
Trre12g04297 638 MobiDBLite consensus disorder prediction 23 44 - -
Trre12g04297 638 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 210 629 IPR005202 -
Trre12g04297 638 MobiDBLite consensus disorder prediction 184 201 - -
Trre12g04297 638 MobiDBLite consensus disorder prediction 101 130 - -
Trre12g04297 638 MobiDBLite consensus disorder prediction 236 259 - -
Trre12g04297 638 Pfam GRAS domain family 271 635 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04297 Trre-Chr12 57882604 57884520 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04297 50 637 GRAS Transcription Factor Family AT2G29060 45.041 2.06e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre12g04297 GRAS 8.9e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04297 - - cam:101504630 989.178