Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04294 ATGGATCCAAACTTCTTAGGATTTGAAACAACCTTCGAAATCGACGACTATGGTAACATTCACTTCCTTTCTCACCCAAATCCAACCACTCACGATGATCCTTATTTCTATCCACCACTCTATGTGGACCCACCACCACCACAACCACCGAGTTATTCTGAGGAGCCACTCGTTTCCACTGATCCTTCTTCTGAAGACAATGATTTTTCAGAAACAGTTAAATACATAAGCCAAATTCTCATGGAAGAAGATTTTCAACAAAAACCTTGTATGTGTTATGACCCAATTACTCTTCAACATACTGAGAAAATTTTCTTTGATGCTTTGGAATCTAAATCACCTCTTTCACCTAATCAACACCCTCTTGATGTTCTTCAGATTCCTACTTCATCATCTACTGATTCTTCTGGAAACAACAGTTCTTGTTCTAATGACTTGTTGAAGCCTCTTTCACCTGATACACCTGTTTCAGGTAGCACTGATTCTGGTTTTAGTTCTATTTCAAATGTTAAATCTCAGTTTATTGTTCCTAAACATGGTTTGAATTATAATAATGATAGTATTAGTGATGGGGTTTTGGATTTGGATTCTTCTGAGACTAAGGTTTTAGCTCAGAATATTTTTAGTGATGTTGATTCTATGTTGCAGTTTAGAAAAGGGTTAGAGGAAGCTAGTAAATTTCTTCCTCAAAAGCCTCAGCTTTTTACTGGTTTGGAGTCTCATGAGTCTAAGGGAAGGGTTGAAGTGATTAAGAAAGAGGGTAGTGTTAGGGAAAATTCAAATTCGAGTTATTCAAAGAATTCGAGTTCACAAGGTTTGTTGAAGAGTAGTAGAAAGAATCATGAGCGACAAGGTAGTGAAGATGAAGAAGGAAGAAGTAATAAACAGTCTGCAGTTTGTGTTGAGGAGAGTGAAATAACTGAGATGTTTGATAGGGTTTTGCTTAGTGTCGAAAATGTGCCGTTGTGTGCTGAAAACAAGGATGGATCGGTGGTGCAGAGTAGTGCGAAGGTTGGTGAATCTGATGGAAGAGGGAAAATGCGTTCTAAGAAACCAGGGAAGAAGAAGGAAACTGTGGATTTGAGGACCCTTTTGGTTCTTTGTGCACAAGCTGTTTCTGCTAGTGACAATAGGACTGCTAATGAATTGTTAAAGCAGATTAGGCAGCATTCTTCTCATTTAGGTGATGCGTCGCAGAGGTTGGCTCATTACTTTGCAAATGCGCTTGAAGCGCGTATGGTTGGTGCTGGTACCGGTACACAAATATTATATATGAGCCAGAAGATGTTTAGTGCTGCTGATTTCTTGAAAGCTTACCAAGTTTTTATATCTGTTTGCCCTTTTAAAAAAATTGCACATTTCTTTGCAAATAAAATGATTTTGAAAACAGCTGAAAAGGCAAAAACCCTTCACATTATTGATTTTGGTATCTTATATGGTTTCCAGTGGCCTATTCTTATCAAGTTTTTGTCAAAAAGAGTTGGCGGACCTCCCAAGCTACGCATCACCGGAATTGAGTATCCCCAAGCTGGCTTTCGACCGGCTGAAAGAATTGAGGAAACTGGCCGGCGTCTAGCTAACTATTGTGAGCGTTTCAATGTTTCATTTGAATACAAGGCCATACCATCGCGGCACTGGGAAACCATTCAAATTAAAGACCTTAATATTAAGAGCGACGAGGTAGTTGCTGTGAACTGTCTGATAAGGTTTAAGAATTTACATGATGAGACAATTGAAGTAAACAGTCCCAAAGATGCAGTTTTGAAGTTAATCAGGAAGATAAATCCGAGTATATTTGTTCAATCCATATTAAATGGAACTTATAATGCACCTTTCTTTTCCACGCGCTTCAAGGAGTCGCTTTTTCATTATTCTGCAATGTATGATATGTATGATACTCTCATATGTCGTGAAAATGAATGGAGGTTGATGATCGAGAGAGAGTTTTTGGGTCGGGAGATTATGAATGTTGTAGCATGTGAAGGTTTAGAGAGGGTTGAGAGGCCTGAGACTTATAAACAGTGGCAGGTTAGGAATCTTAGGGCTGGTTTTAGACAGCTCCCACTGGATAAGGAGATAATGGACAACTTTAGAGGTAAGCTGAGAGCATGGTACCACAAAGATTTTGTCTTTGACGAAGATAACAACTGGATGCTTCAAGGTTGGAAAGGCCGCATTTTGTATGGTTCGGCTTGTTGGGTGCCAGCATAA 2211 0.3917 MDPNFLGFETTFEIDDYGNIHFLSHPNPTTHDDPYFYPPLYVDPPPPQPPSYSEEPLVSTDPSSEDNDFSETVKYISQILMEEDFQQKPCMCYDPITLQHTEKIFFDALESKSPLSPNQHPLDVLQIPTSSSTDSSGNNSSCSNDLLKPLSPDTPVSGSTDSGFSSISNVKSQFIVPKHGLNYNNDSISDGVLDLDSSETKVLAQNIFSDVDSMLQFRKGLEEASKFLPQKPQLFTGLESHESKGRVEVIKKEGSVRENSNSSYSKNSSSQGLLKSSRKNHERQGSEDEEGRSNKQSAVCVEESEITEMFDRVLLSVENVPLCAENKDGSVVQSSAKVGESDGRGKMRSKKPGKKKETVDLRTLLVLCAQAVSASDNRTANELLKQIRQHSSHLGDASQRLAHYFANALEARMVGAGTGTQILYMSQKMFSAADFLKAYQVFISVCPFKKIAHFFANKMILKTAEKAKTLHIIDFGILYGFQWPILIKFLSKRVGGPPKLRITGIEYPQAGFRPAERIEETGRRLANYCERFNVSFEYKAIPSRHWETIQIKDLNIKSDEVVAVNCLIRFKNLHDETIEVNSPKDAVLKLIRKINPSIFVQSILNGTYNAPFFSTRFKESLFHYSAMYDMYDTLICRENEWRLMIEREFLGREIMNVVACEGLERVERPETYKQWQVRNLRAGFRQLPLDKEIMDNFRGKLRAWYHKDFVFDEDNNWMLQGWKGRILYGSACWVPA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04294 736 MobiDBLite consensus disorder prediction 276 296 - -
Trre12g04294 736 ProSiteProfiles GRAS family profile. 352 734 IPR005202 -
Trre12g04294 736 MobiDBLite consensus disorder prediction 256 275 - -
Trre12g04294 736 MobiDBLite consensus disorder prediction 252 298 - -
Trre12g04294 736 MobiDBLite consensus disorder prediction 40 68 - -
Trre12g04294 736 Pfam GRAS domain family 361 733 IPR005202 -
Trre12g04294 736 MobiDBLite consensus disorder prediction 334 354 - -
Trre12g04294 736 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 284 728 IPR005202 -
Trre12g04294 736 MobiDBLite consensus disorder prediction 54 68 - -
Trre12g04294 736 MobiDBLite consensus disorder prediction 117 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04294 Trre-Chr12 57851420 57853630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04294 72 736 GRAS Transcription Factor Family AT1G07530 50.723 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre12g04294 GRAS 1.8e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04294 - - cam:101504630 1083.55