Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04293 ATGCCCAAATTGAGGATCATAGGGATAGAGCTTTCAAAATCATTTGAAAGGGTGAATGAAAGAAACTGGTCTTATAGGGTTACAAGCTATTGGGAAAGTATCAAAGTTGAGGATTTTAAGATAAGGAAAGATGAATTTATAGCTGTGAATTGTTTGTTTCGGTTTGAGAATCTAGTTGATAAGACTGTTGTTTCCGAGAATCCGAGGGATGGTGTTTTGGATTTGATTAAGAAGTCAAATTTGAGTACATTTGTTCATAGCATTGTTAATGGTTGTTATGATGCACCTTTTTTGTGA 297 0.3434 MPKLRIIGIELSKSFERVNERNWSYRVTSYWESIKVEDFKIRKDEFIAVNCLFRFENLVDKTVVSENPRDGVLDLIKKSNLSTFVHSIVNGCYDAPFL 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04293 98 Pfam GRAS domain family 27 86 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04293 Trre-Chr12 57834459 57834755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04293 2 98 GRAS Transcription Factor Family AT1G07530 42.609 6.85e-24 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre12g04293 GRAS 1.7e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04293 - - mtr:11408919 127.872