Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04276 ATGGGACTTTGTTTTAGCGCTAAAGTTAAAGCTGAAAATCCTTATAAAAACACTGGGCCTCAGACTGCTGGAAGTGAGGATGATATCTTGCGGCGGTCATCGAATTTGAAGAGCTATACCTTTGCAGAACTTGAGATTGCCACGGGAGATTTCGATCGATATAGTATAATAGGACTTGGTGGTTTTGGAGTGGTTTATAAGGGATGGATTCATCAGAATTCATTGGCTGCTACCAAACCTGGCACTGGCATTTCTGTTGCTGTCAAAAGACTAAGACCAAAGAGCTTACAAGGTCATAGGGAGTGGTTGACCGAAATCAACTATCTAGGAAAGTTTTCTCATCCTAATTTAGTGAGATTGATTGGTTATTGCCTTGAAGATCAATACCGCCTTCTCGTCTATGAACTTATGCCCCTTGGAAGCTTGGAGGATCACTTGTTCACCAGATATCGAATTGGAAAGCTAGATCCCGTCGAGCCTCTTTCTTGGAGCATCCGTTTAAAGGTTGCTCTTGATGCTGCCAAAGTACTTGCATTTCTGCACACTGCTACAACAAAAGTGATATATAGAGATTTCAAGACTTCAAATATCTTGTTGGATTCTGATTATAATGCAAAGCTCTCTGATTTTGATCTGGCAAGGGATGGTCCGAAGGACAACGGAAGCCACGTGTCCACCAGGATAATGGGAACTGAGGGATATGCAGATCCTGAATATGTAGACTCGGGTCATCTTACTACTAAGAGTGATGTCTATAGTTTTGGAGTTGTCTTGCTGGAAATATTAACCGGTGAGTTGGTACTCGACATGACTAAATATGGAAATGACAACTTGGTGGACTACATTAAACCACACCTGGCCGACAAAACCACGATTTTCGGTCTGTTGGACAGTGAGCTTAAAGGGCAGTATTCAGCAGATGAGGCATACAAGGTAGCCACTCTTGCTTTGCAATGCCTATCATTAGAATCCAAGTTCAGGCCTAACATGGATGAAGTTGTTAGAACTTTGGTGAAGCTGCAAGTTCCTAATTTGAATTTAGGCAATCAAAAGCATGCTGGTGATGGACAGCCTTCAAACTTGGTAGAACTGACTGTCCTACAGACAGACCAGGGAAACCATCATGCTTGA 1131 0.4253 MGLCFSAKVKAENPYKNTGPQTAGSEDDILRRSSNLKSYTFAELEIATGDFDRYSIIGLGGFGVVYKGWIHQNSLAATKPGTGISVAVKRLRPKSLQGHREWLTEINYLGKFSHPNLVRLIGYCLEDQYRLLVYELMPLGSLEDHLFTRYRIGKLDPVEPLSWSIRLKVALDAAKVLAFLHTATTKVIYRDFKTSNILLDSDYNAKLSDFDLARDGPKDNGSHVSTRIMGTEGYADPEYVDSGHLTTKSDVYSFGVVLLEILTGELVLDMTKYGNDNLVDYIKPHLADKTTIFGLLDSELKGQYSADEAYKVATLALQCLSLESKFRPNMDEVVRTLVKLQVPNLNLGNQKHAGDGQPSNLVELTVLQTDQGNHHA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04276 376 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 137 349 - -
Trre12g04276 376 Pfam Protein tyrosine and serine/threonine kinase 55 337 IPR001245 GO:0004672|GO:0006468
Trre12g04276 376 FunFam Serine/threonine-protein kinase BIK1 19 136 - -
Trre12g04276 376 ProSiteProfiles Protein kinase domain profile. 51 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04276 376 SUPERFAMILY Protein kinase-like (PK-like) 30 337 IPR011009 -
Trre12g04276 376 PANTHER OS01G0588500 PROTEIN-RELATED 28 341 - -
Trre12g04276 376 Gene3D Phosphorylase Kinase; domain 1 25 136 - -
Trre12g04276 376 Gene3D Transferase(Phosphotransferase) domain 1 137 353 - -
Trre12g04276 376 ProSitePatterns Protein kinases ATP-binding region signature. 57 89 IPR017441 GO:0005524
Trre12g04276 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04276 Trre-Chr12 57732248 57742598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04276 36 340 Receptor kinase-like Gene Family AT3G58690 44.625 6.49e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre12g04276 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04276 - - tpra:123896631 603.594