Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04268 ATGAAAGTGAAAAGGAGTTCCGGGAAAGCAAATTACACTTTCAAACATGCTCCCCCGTACTGTGAAATATGGTTTATATATAAAGGCAGACACATTTGGACAAAAGAGGCTTCTGAAACACCGTGTTCCTTCTCTTCATGTGCTCAACCTGAGATTGAAACCACAGAAAGCTTGAGATGTAGATCTTTTCAATATCGTAAGAACGAATTACCCCATTTGGAATATCTTCAACCAAATTCTCCTAGAACTGCAGTATGTTCTGAAATTAGAAGCTTGGATCTGGGTGAAATCATAGAAACCGAAGCCACTAATTCATCCAAATCATCCAGTTGCAGCAGTTATTGTTCTCCGCAAAATTCTACTGCGGTTTATCTAGATGCATATTCAGAGATCATGGAAGAAAGAATTAACAGTCAACTTATTGAAACCAAAAGAGAAGCTGAGGCAGCAACTGATGAGTCATTTGCAGAACTAATAAAGTGCAGGAGGTCGGAAGCCGAAGCTGCGGAAGCCATACGAAAAGTCAAATTGTTTGAATCTGCCCATGGACATGAGGTGGAGCTCAGGAAAGAGGCTGAGGTTGCACTTAGAGATACCATACTAGAACAACAAAAGCTCTTAGAAGAAAATGAACATATTTCGGGAGAGCTACAAATGACAATGAGAAATGTGGCCCTACTAGATAGCCGTGCTAAGGAAACAACCCGTAGGCGAGATGAAGCTGCACACGAGCTCTTGCTAATTCAAACATCCATATCAACCTTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTTGAACGGTGGAAAAGTCGTGGACAAATCGGAGCAGCTCATTACAATGGAGTCATTGGGTTTGCTGAAGAACTGCCTGAGTTAGCTGAATTCTCTTTATCAGATATTGAAAATGCTACATGTAATTTTTCCGAGAGCTTTAAAATCGCGCAAGGTGGATTTGGTTGTATATATAAGGGGGAGATGTTAGGTAGAACTGTTGCTATAAAGAAGTTCCATCAACAAAATGTGCAAGGACCAGCAGAGTTTCATCGAGAGGTTCAAATTCTTAGTAGTCTCCAACATCCTCATTTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCGAATGGAACTCTTCAAGAATACCTATTCCGAAAAAGTAACATTATCCCTTTGACATGGAATATCAGAGCACGAATGATTGCCGAAATTTCCAGTGCACTATGTTTCTTACATTCTTTTAAACCGGAAGCTATTATCCATGGTGATCTTAAGCCTGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTCAGTAGGCTTGGGACAGAGGAGTCTCTCTATAGTCCTAGTTTCCACTTGAGCACTGAGCCAAAGGGTGCTTTCACATATACGGATCCCGAGTTTCAGCGAACTGGGGTACTAACAACCATGTCTGACATCTACTCCTTCGGGCTTATTATTTTGCAACTCCTCACTGGTAGGACACCAGTTGGATTAGCAGTTCTAGTTCGCCATGCAGTTTCGTGTGGAAAATTGTCATCAATTCTTGATTCTTCAGCTGGAGAATGGCCTTTATCTGTAGCATCACGGTTGGTTGAACTGGGTTTGCAATGTTGCGCACAAAATCGCAGAAACAGGCCAGAGTTAACACCTACTCTCGTGAGAGAATTGGAACAGTTACATGTTTCAGAAGAGAGACCGGTGCCATCTTTTTTCCTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATCGCAGCAGATGGATTTACATATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGGCACGATACGTCTCCAATGACTAATTTAAAATTGAGTCACTTGCTTCTCACTCCCAATCACTCGATTAGACTTGCCATCCAAGATTGGCTCTGCAAATCATAA 1980 0.4187 MKVKRSSGKANYTFKHAPPYCEIWFIYKGRHIWTKEASETPCSFSSCAQPEIETTESLRCRSFQYRKNELPHLEYLQPNSPRTAVCSEIRSLDLGEIIETEATNSSKSSSCSSYCSPQNSTAVYLDAYSEIMEERINSQLIETKREAEAATDESFAELIKCRRSEAEAAEAIRKVKLFESAHGHEVELRKEAEVALRDTILEQQKLLEENEHISGELQMTMRNVALLDSRAKETTRRRDEAAHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQIGAAHYNGVIGFAEELPELAEFSLSDIENATCNFSESFKIAQGGFGCIYKGEMLGRTVAIKKFHQQNVQGPAEFHREVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQEYLFRKSNIIPLTWNIRARMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLGTEESLYSPSFHLSTEPKGAFTYTDPEFQRTGVLTTMSDIYSFGLIILQLLTGRTPVGLAVLVRHAVSCGKLSSILDSSAGEWPLSVASRLVELGLQCCAQNRRNRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLLLTPNHSIRLAIQDWLCKS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04268 659 PANTHER OS02G0152300 PROTEIN 6 653 - -
Trre12g04268 659 Pfam U-box domain 589 658 IPR003613 GO:0004842|GO:0016567
Trre12g04268 659 ProSiteProfiles U-box domain profile. 588 659 IPR003613 GO:0004842|GO:0016567
Trre12g04268 659 SUPERFAMILY RING/U-box 586 658 - -
Trre12g04268 659 Coils Coil 133 153 - -
Trre12g04268 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 589 659 IPR013083 -
Trre12g04268 659 Gene3D Transferase(Phosphotransferase) domain 1 388 588 - -
Trre12g04268 659 Gene3D Phosphorylase Kinase; domain 1 292 387 - -
Trre12g04268 659 ProSiteProfiles Protein kinase domain profile. 315 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04268 659 SMART Ubox_2 592 655 IPR003613 GO:0004842|GO:0016567
Trre12g04268 659 SUPERFAMILY Protein kinase-like (PK-like) 299 575 IPR011009 -
Trre12g04268 659 Pfam Protein tyrosine and serine/threonine kinase 320 571 IPR001245 GO:0004672|GO:0006468
Trre12g04268 659 CDD RING-Ubox_WDSUB1-like 590 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04268 Trre-Chr12 57682019 57684361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04268 7 656 U-box Gene Family AT2G45910 36.607 9.14e-139 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre12g04268 PK_Tyr_Ser-Thr 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04268 - - gmx:100788846 1087.4