Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04267 ATGAAGCTTTTGAACAACCCTTCCCACCCTTTTCCTTTTTCTTCTCAATCTCATATTCATTCATCTATCATGGAACAACAACATCAATCTTCCCCAACTACTAACCCTAATAATAAACTTCATCTTGCTGTTGGTAAATCCCTTCACAAAACCACTACTTTACTTCAATGGACTTTCAATCACTTTAAAAACCAAGAAATTGTCTTGATTCATCTTTATCAACCTTCTCCTGTTATACCCACTTTATTGGGAAAAATGCCAGCTTCCCATGCTAATCCTGAAGTGGTATCTGCTTTTAGAAGAGAGGAAAGAGAACAGACTGTGAGGTTTACTGATAAGTATTTGAGCATTTGTTGTGCAGCTAAGGTGAAGGCCAGCGTTATTGTAGCGGAAACTGATCAAATCCAAAAAGGAATTGTTGATTTGGTTGTTAGCCATAATATTAGGAAGCTTGTCATTGGAGCTGAAACGGAAAAGTAA 480 0.3708 MKLLNNPSHPFPFSSQSHIHSSIMEQQHQSSPTTNPNNKLHLAVGKSLHKTTTLLQWTFNHFKNQEIVLIHLYQPSPVIPTLLGKMPASHANPEVVSAFRREEREQTVRFTDKYLSICCAAKVKASVIVAETDQIQKGIVDLVVSHNIRKLVIGAETEK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04267 159 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 57 155 - -
Trre12g04267 159 MobiDBLite consensus disorder prediction 1 39 - -
Trre12g04267 159 Gene3D HUPs 33 156 IPR014729 -
Trre12g04267 159 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 22 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04267 Trre-Chr12 57680644 57681463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04267 37 159 U-box Gene Family AT2G45910 36.585 5.91e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04267 - - gmx:100784632 174.866