Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04262 ATGTACAAGTATCTTTGCTCAATGGAGAAGGAGAAAAAGAGAAGGCCAAAAATGGATTACATGAAAGTACTTCAAAAAGACATTACTCCACTCATGAGAGGACATTATATTGATTGGTTAGCAGAAGTTGCTGACGATTACAACCTTCTTCCTGATGTCCTTTATCTCGCTGTTTCATACATTGATAGGTACCTATCTTTTCACCCTGTGAGAAAGATTAACCTTCAATTGTTGTGTGTTACATCCATGTACATTGCATTGAAGTATGAAGATATTAGCACACACAATGTGGAAAATTTCTCCGTAATTACATGCAATTTTTACAACAAGGAGGAGGTTCTAGAGATGGAAAATAAAATACTCAAGATCCTAGATTTTGATCTGAGCACCCCTACTACTAGGACTTTTCTAAGGAGGTTTAATGAAATTACTCGTGAGGAAAATAATGATTCAAGTTGGAAGTTTAAGTTGTTGACAGAATATCTTGGTGAGCTAAGTTTATTGGAATATGAATGTTTGATGCTCTTGCCTTCTTTGGTGGCTGCGTCTATCACATTGCTTGCTAGATTCATTGTTTGGCCTGAAAAACGTCCATGTTGGACATTAGCCCTGCAAGAATACTCTGAGTATAGCTCATTTGAGTTGAAGGAATGTGTTCTTATCTTACATGATTTGTACATGTCTAAAAGAGGAACAGAATATAAAGTTATTCGAAAGAAATATGGAACACAAGAGTTGCAAAATGTGGCAAACCTGCCTTCTCCTTCTAAATTACCAAGTTATTTGTTTGAAGTTGAAGTAGAATCTCGACAAAAAAAGAAGTTGAAGCAGAAGTAG 837 0.3584 MYKYLCSMEKEKKRRPKMDYMKVLQKDITPLMRGHYIDWLAEVADDYNLLPDVLYLAVSYIDRYLSFHPVRKINLQLLCVTSMYIALKYEDISTHNVENFSVITCNFYNKEEVLEMENKILKILDFDLSTPTTRTFLRRFNEITREENNDSSWKFKLLTEYLGELSLLEYECLMLLPSLVAASITLLARFIVWPEKRPCWTLALQEYSEYSSFELKECVLILHDLYMSKRGTEYKVIRKKYGTQELQNVANLPSPSKLPSYLFEVEVESRQKKKLKQK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04262 278 PANTHER CYCLINS 1 241 IPR039361 -
Trre12g04262 278 SMART Cyclin_C_2 131 255 IPR004367 -
Trre12g04262 278 Pfam Cyclin, N-terminal domain 4 129 IPR006671 -
Trre12g04262 278 SUPERFAMILY Cyclin-like 7 128 IPR036915 -
Trre12g04262 278 SMART cyclin_7 38 122 IPR013763 -
Trre12g04262 278 SMART cyclin_7 135 224 IPR013763 -
Trre12g04262 278 PIRSF Cyclin_A_B_D_E 1 266 IPR046965 GO:0016538|GO:0044772
Trre12g04262 278 FunFam G2/mitotic-specific cyclin 16 129 - -
Trre12g04262 278 Pfam Cyclin, C-terminal domain 131 254 IPR004367 -
Trre12g04262 278 Gene3D - 18 122 - -
Trre12g04262 278 Gene3D - 123 264 - -
Trre12g04262 278 SUPERFAMILY Cyclin-like 131 257 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04262 Trre-Chr12 57622008 57624785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04262 11 264 Core Cell Cycle Gene Families AT5G43080 48.819 3.30e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04262 K06627 - gmx:100776007 263.848