Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04261 ATGGTTTTCTCTTCTATTCCATCTTATTTAGATCCTCTCAATTGGCAGCAACAGCCAAATCAACATCAGTTGCTTCCACCACTATCCTCACAACCACATGGTGCAGGCTCAATAATCCGGCCCGGTTCGTTACCGGATCAGGCTCAAGCTCAAGCTCAGGAAGTTCAAACAGGTCAGGCTCAAGCTCAGCAAGCTAAGTTACCACCGCCTTCGGAAACAGCTTTAAAGTGTCCTCGTTGCGAATCAACCAACACAAAATTTTGTTACTACAACAACTATAACTTGTCTCAACCAAGACACTTTTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCATTAAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGAAGCAAAAAGACCAAAAAGAGTACTACTACTTCTACTTCTACTCCTTCCAAATCTCCTAATGATAAAGAATATTCAACAAGTGCAATCCATTCAACTTCTTCAAACCCTCATGGTGATCAATTTTTGCAACCAACTAACAGAAATTACTTGAACATGTCATCACTTCAGAATCTGAACCGGTTTAGTGTTGGAAACATGTTTCAAATGGGAGATTATAGCTCAAATACCGGTGGAGGAGAAGGCGGAGTTGTGGATCAGTGGCGGTTTCAACAATTTCCTTTCATGAATAATGGTTTTGAGTCAAGTTCAAATGTTTCTTTCCCATTTCAAAGTGAAATTATTGAGCCACAAACTTCTTCTAGGGTTACTACTCAGATGCCTACATCGGTTAAATCGGAATACAACGGAGGTTTGAATTTGCTAAGATCTCCTCTTAGCTTCTCACAGAATAATAATCATTACAACAATTCATCATGGACTGATATTTCTGGTCTTGCAACTTCTTCCGCTAGTCGTCTCATGTAA 903 0.4064 MVFSSIPSYLDPLNWQQQPNQHQLLPPLSSQPHGAGSIIRPGSLPDQAQAQAQEVQTGQAQAQQAKLPPPSETALKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTKKSTTTSTSTPSKSPNDKEYSTSAIHSTSSNPHGDQFLQPTNRNYLNMSSLQNLNRFSVGNMFQMGDYSSNTGGGEGGVVDQWRFQQFPFMNNGFESSSNVSFPFQSEIIEPQTSSRVTTQMPTSVKSEYNGGLNLLRSPLSFSQNNNHYNNSSWTDISGLATSSASRLM 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04261 300 MobiDBLite consensus disorder prediction 133 171 - -
Trre12g04261 300 MobiDBLite consensus disorder prediction 44 68 - -
Trre12g04261 300 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Trre12g04261 300 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Trre12g04261 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 54 250 IPR045174 GO:0003700|GO:0006355
Trre12g04261 300 MobiDBLite consensus disorder prediction 119 171 - -
Trre12g04261 300 MobiDBLite consensus disorder prediction 20 73 - -
Trre12g04261 300 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04261 Trre-Chr12 57596871 57597941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04261 1 294 C2C2-Dof Transcription Factor Family AT2G37590 36.000 2.03e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre12g04261 zf-Dof 9.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04261 - - psat:127087162 392.889