Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04243 ATGTCTCAAAGAATCGGAACAAAGCTATTTGTTAGCAGGTTATCATTTCACACTACAAAACAAAGGTTCGAATCATTGTTCTCACCATTCGGAGAACTTACTGAAGCTTCACTTATAATAGACCCAAAAACTCAAAGGCCTAAAGGTTTTGGTTTTGTTACTTACCAATCTGAAATTCAAGCTCAAAAGGCTATCAAAGCATTGAATGCAACGATAGTTGATGGAAGGATTATATTTGTTGAACCTGCAAAACCAAAGGACTCGTGA 267 0.3633 MSQRIGTKLFVSRLSFHTTKQRFESLFSPFGELTEASLIIDPKTQRPKGFGFVTYQSEIQAQKAIKALNATIVDGRIIFVEPAKPKDS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04243 88 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 88 - -
Trre12g04243 88 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Trre12g04243 88 Gene3D - 2 88 IPR012677 -
Trre12g04243 88 SMART rrm1_1 8 81 IPR000504 GO:0003723
Trre12g04243 88 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 87 - -
Trre12g04243 88 SUPERFAMILY RNA-binding domain, RBD 6 87 IPR035979 GO:0003676
Trre12g04243 88 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04243 Trre-Chr12 57449263 57450615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04243 11 86 Eukaryotic Initiation Factors Gene Family AT5G06000 42.105 2.31e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04243 - K13195 pcin:129306862 122.864