Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04227 ATGGTGCAATCTGATGAAGTACGAAAAGGACCATGGACAGAACAAGAAGATTTCAAATTGGTGTCATTTGTTGGATTATTTGGAGACAGAAGATGGGATTTTATTGCTAAGGTATCAGGTTTGAATAGAACTGGTAAGAGTTGTAGGTTAAGATGGGTTAATTATCTTCATCCTGGTCTTAAACGAGGTAAAATGACTCCTCATGAAGAACGTCTTGTCCTTGAACTTCAATCCAAATGGGGAAATAGGTGGTCAAGAATTGCACGAAAGTTACCGGGACGAACCGATAATGAGATAAAGAATTACTGGAGAACTCACATGAGGAAGAAGGCTCAGGACAAAAAGAGGGGATCATCAATTCCATCAACAGAACACCATGCAATGAATTCTCAAGTTTCCAAAGAGGCAGGGGAAGAAAGTTTTTATGACACAGGAGGGTCAACAATATCAAACCAAATTATTAAAGCAGTAGGAGAAGAACATGAACAAGAAATTTCAATGGATGATATATGGAAAGATATTGATCTGTCAGAAGAAAACAGTCTGCATAATGAAGAAACAGGCTGCAATAATAATAATAATAACATATCTTATTTACCAAAGACTTCTCAATCATGGGAGTATAATTCCTCAGACTCACTATGGGTGATGGATGCAGAAAGTATGTTATTCCCTGAGGCTCCTATGATTGATGACACTTATTTTTCTTGCTATACTAATTAG 723 0.3693 MVQSDEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQDKKRGSSIPSTEHHAMNSQVSKEAGEESFYDTGGSTISNQIIKAVGEEHEQEISMDDIWKDIDLSEENSLHNEETGCNNNNNNISYLPKTSQSWEYNSSDSLWVMDAESMLFPEAPMIDDTYFSCYTN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04227 240 SMART sant 8 58 IPR001005 -
Trre12g04227 240 SMART sant 61 109 IPR001005 -
Trre12g04227 240 FunFam MYB transcription factor 64 131 - -
Trre12g04227 240 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Trre12g04227 240 Gene3D - 64 136 - -
Trre12g04227 240 MobiDBLite consensus disorder prediction 122 144 - -
Trre12g04227 240 CDD SANT 64 107 IPR001005 -
Trre12g04227 240 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Trre12g04227 240 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Trre12g04227 240 CDD SANT 11 56 IPR001005 -
Trre12g04227 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Trre12g04227 240 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Trre12g04227 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Trre12g04227 240 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 187 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre12g04227 240 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Trre12g04227 240 MobiDBLite consensus disorder prediction 108 144 - -
Trre12g04227 240 FunFam Myb transcription factor 9 61 - -
Trre12g04227 240 Gene3D - 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04227 Trre-Chr12 57351523 57352828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04227 1 220 MYB Transcription Factor Family AT5G59780 58.850 2.40e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g04227 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04227 K09422 - mnt:21394127 286.574