Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04223 ATGGCTCCTCCTAAAGGTGATGTTTCAAAGAAGGCCGATCCAAAGGCACAGGCCTTGAAAGCTGCTAAGGCAGTGAAATCGGGCACTGCCATTAAGAAGAAAGCAAAGAAGATCAGGACAACTGTTACATTCCACAGGCCAAAGACAATGTCAAAGGAGAGGAACCCCAAATACCCTCGCATCAGTGCTACACCAAGGAACAAGCTTGATCATTATCAGATTCTGAAATATCCTCTCACCACCGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGAGAGCTGACAAAAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCCGATGGCACCAAGAAGGCCTATGTGAGGTTGACACCTGATTATGATGCTTTGGATGTAGCAAACAAGATTGGAATTATTTAA 465 0.4323 MAPPKGDVSKKADPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTMSKERNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04223 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 8 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre12g04223 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 GO:0019843
Trre12g04223 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre12g04223 154 Gene3D - 35 154 IPR012677 -
Trre12g04223 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre12g04223 154 NCBIfam 50S ribosomal protein L23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Trre12g04223 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre12g04223 154 FunFam 60S ribosomal protein L23a 32 154 - -
Trre12g04223 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Trre12g04223 154 MobiDBLite consensus disorder prediction 43 65 - -
Trre12g04223 154 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04223 Trre-Chr12 57324070 57325599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04223 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.312 6.27e-70 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04223 K02893 - jre:109003029 254.218