Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04219 ATGTTCTATGATGAAGGGCCCTTGCCTCTACCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCTAAAGGTCTTGCTTTTCTACACGAAGGAGCTCAAAGGCTTGTGATATATCGCGATTTCAAGACATCTAATATTCTGTTAGATGCGGTATGTACACTTAAACTTTTAATATTAACCTCTAACGGCTTATTTTGTTTAGGACATTTATCATCGAAAAGTGATGCCTACAGCTTTGGAGTAGTACTACTCGAAATGTTCACCGGTCGACGAGATATTGACAAGAAAAGACCAAAAGGAGAGCACGATCTAGTGGAGTGGGCAAGACCAATACTTGGAGATAGGAGGTTGTTCTACCGAATAATCGATCCCCGTCTTGAAGGTCACTTATCAGTTAAAGGATCACAGAAAGTAGCACAACTAGCTTCTCAGTGCCTTAGTCGTGATCCAAAATCTAGACCTTTGATGAGTGAAATTCTTCAAGCTTTAAAACCTTTGCCAAACCTTAAGGACGTTGTCATATCATCTCATCAATTCAAGATTGCGTGTGTTGATTGTACCATGTCCATGCCGAATTCTAAAAACGGTACTAGAACTGATATAGTATCTTTACCAAAGGGTCAGCCGAAAAGGACCTTGTCAAGTTCACATTATGGACATGCTTCTCCGTATCCGCGTCATAGAAAGTTTCCAAAACCTATTGCGTAA 711 0.4037 MFYDEGPLPLPWSIRMKIALGAAKGLAFLHEGAQRLVIYRDFKTSNILLDAVCTLKLLILTSNGLFCLGHLSSKSDAYSFGVVLLEMFTGRRDIDKKRPKGEHDLVEWARPILGDRRLFYRIIDPRLEGHLSVKGSQKVAQLASQCLSRDPKSRPLMSEILQALKPLPNLKDVVISSHQFKIACVDCTMSMPNSKNGTRTDIVSLPKGQPKRTLSSSHYGHASPYPRHRKFPKPIA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04219 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Trre12g04219 236 PANTHER OS01G0588500 PROTEIN-RELATED 10 57 - -
Trre12g04219 236 Pfam Protein tyrosine and serine/threonine kinase 70 164 IPR001245 GO:0004672|GO:0006468
Trre12g04219 236 MobiDBLite consensus disorder prediction 195 220 - -
Trre12g04219 236 SUPERFAMILY Protein kinase-like (PK-like) 6 164 IPR011009 -
Trre12g04219 236 MobiDBLite consensus disorder prediction 195 236 - -
Trre12g04219 236 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04219 236 Gene3D Transferase(Phosphotransferase) domain 1 2 59 - -
Trre12g04219 236 Gene3D Transferase(Phosphotransferase) domain 1 60 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04219 Trre-Chr12 57290685 57291807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04219 6 167 Receptor kinase-like Gene Family AT3G58690 43.085 6.15e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Trre12g04219 PK_Tyr_Ser-Thr 1.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04219 - - gmx:100499647 327.02