Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04212 ATGACGAAGGTCTCCCACAACTTCGATGACGCATTGGCGTATGTTAAGGCATATAATAGGAAAAAGTATGATGAGTTTTTAAACATCGTACATGATTTGAAATTGAAGAGGGGTGGAAGAAGAAGAATTGCTACAAGAATGAACATGTTGTTTGAAGGCCATTCGGATTTAATTTTGGGATTCAACACCTTAATGCCAATGGAATATCAAATCAAACTTTCTCAGAATAATGGAAAAAATGTGAAGGTAGAAGAAAATGGTCAACTTCCTTGGGATGTGCTTGATAATATTGTCAAAAGACTAGATTTTGATGACCTCTTTCACTTTGCTGACTTCTCAACTATGAATTATGTCAAATTGGAAACTTTGGGCGACATTGCATTATTTTATGTTGCGAGCAGAAATTGTTGTGCATTGAGCAATCCAAATAGATGGGGATATCAAAGCAATTCTGTCTATATCATTGGTCCTCCACCCACCTCAAAATGTACAATGTATTCCTGGGATGATAAAAAATTGCAGAAAGACATTACACTTCCATCTCATGGTTCTACTCGAAGACATCCCTCAATGCTTGATTGGTTATTTAGACATCTACGAAATGAGGTAGATTATTCTCTTGTTGAGTAA 630 0.3603 MTKVSHNFDDALAYVKAYNRKKYDEFLNIVHDLKLKRGGRRRIATRMNMLFEGHSDLILGFNTLMPMEYQIKLSQNNGKNVKVEENGQLPWDVLDNIVKRLDFDDLFHFADFSTMNYVKLETLGDIALFYVASRNCCALSNPNRWGYQSNSVYIIGPPPTSKCTMYSWDDKKLQKDITLPSHGSTRRHPSMLDWLFRHLRNEVDYSLVE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04212 209 SUPERFAMILY PAH2 domain 6 69 IPR036600 GO:0006355
Trre12g04212 209 PANTHER SIN3B-RELATED 9 111 IPR039774 GO:0003714
Trre12g04212 209 Gene3D Paired amphipathic helix 2 66 IPR036600 GO:0006355
Trre12g04212 209 ProSiteProfiles PAH domain profile. 4 68 IPR003822 GO:0006355
Trre12g04212 209 Pfam Paired amphipathic helix repeat 22 63 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04212 Trre-Chr12 57227527 57237277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04212 10 73 WRKY Transcription Factor Family AT4G12020 43.478 9.34e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g04212 PAH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04212 K11644 - tpra:123915142 150.214