Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04211 ATGATCATCAATGGAGCACTATCAGGAAACTATCTTGGACTGTTTAACAGATCAAGTTCAGGTGATGATTCTAACCATGTTTATGCAGTTGAATTCGATGATTTTAGAAACGAAGAGTTTGATGAAGTTAATGATAATCATGTTGGTGTTGATTTGAATTCAATGGTTTCTATGTATTCCGAACCTGCTGAATTTTGGGGTGGAAAAAATGGTGAAAATTTAGAAAAATTGAAACTTTCTAGTGGTGAAAATTATCAAGTTTGGATTGAGTTTAGGGATTTTGAAATTAATGTTACTATCGCTCCGGCGGGGAAAAGAAAACCGAAAAAGCCTTTGATTAGTAAGCCAATTAATATTTCTAGGGTTTTCTTGGATGAAATGAAGGAAGATGAAGAGGGAAAATTTGAAGATTGCAAATTGGAGTATTGGCCACATAAGATTAGCTATAAGGAGATTTGCGATGGAACGGGTGGATTTTGTGAAGAAAATGTGATAGGGATTGGAACAAGTGGGAAAATATACAAAGGAGTTTTGAAAGGAGGAGAAGAAGTCGCGGTGAAGAGATTCAATCACGATACTCAACATGGAATGAGAGGGTTTTTAGCAGAGATTTCGAGCCTAGGAAGAATGAAACATCGAAACTTGTTAGGTTTCAAAGGTTGGAGTAAAGGAAAAGGAGGGAAATTGATATTGGTTTATGATTACATGGAGAATGAGAGTTTAGACAAAAGAATCTTCGAGTGTGAAGAGACCAAGTTGCTTAATTGGGAACAAAGAATAAGAGTTTTGGAAAATGTAGCTAGTGGAGTTTTATATCTACATGAAGGTTGGGAATTTGAGGTTTTGCATAGAGACATAAAAGCAAGTAATGTACTACTTGACAAAGATATGAATGCAAGAATAGGTGATTTTGGACTTGCTAGGTTGCAGCATCAAGAACTTGTAACCGACACAACAAGAGTTGTAGGGACTTTAGGGTACATGGCACCAGAATTACTCAAAGTTGGTAAACCATCAACTGCAACCGATGTTTATAGTTTCAGAATATTGATTTTAGAAGTTGTTTGTGGTAGAAGACCAATTGTAATGGATGAGCCACCATTGGTTGAATTGGAATCTTCTCTTATGGAGAAAGGTGAATTAAGTAATGCAATCGATGAACGTTTGAAGGGTCAAATAGAGTGTAAATATAACACCGTGGTAGCCGAGAGATTGCTTCATTTGGGTTTGTTATGTGCTAGTTTTGACTCTTGTGTTAGGCCTACAATGAGACAGGTTGTGAAAGCTTTGGAAGGTGTAAAATGCACCGAGTGTAATGAAGAGTGTGTTCATGTGAGTCTTATCAGAAAAATAAACTCAAACTCAGCAGCATCTTGGTCTAAGAGTTCTACCGATTCCGCGCGTGTAAATTTTCCTACCCTTGATGACATTTTACCGTATAAATATTTTTCTGGAGATTCTTTAAGTGTGTCTTGTCTCAGCCTAGAGCCAATATCGGATTCTCTCTCAGAAGGAAGGTGA 1521 0.3702 MIINGALSGNYLGLFNRSSSGDDSNHVYAVEFDDFRNEEFDEVNDNHVGVDLNSMVSMYSEPAEFWGGKNGENLEKLKLSSGENYQVWIEFRDFEINVTIAPAGKRKPKKPLISKPINISRVFLDEMKEDEEGKFEDCKLEYWPHKISYKEICDGTGGFCEENVIGIGTSGKIYKGVLKGGEEVAVKRFNHDTQHGMRGFLAEISSLGRMKHRNLLGFKGWSKGKGGKLILVYDYMENESLDKRIFECEETKLLNWEQRIRVLENVASGVLYLHEGWEFEVLHRDIKASNVLLDKDMNARIGDFGLARLQHQELVTDTTRVVGTLGYMAPELLKVGKPSTATDVYSFRILILEVVCGRRPIVMDEPPLVELESSLMEKGELSNAIDERLKGQIECKYNTVVAERLLHLGLLCASFDSCVRPTMRQVVKALEGVKCTECNEECVHVSLIRKINSNSAASWSKSSTDSARVNFPTLDDILPYKYFSGDSLSVSCLSLEPISDSLSEGR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04211 506 ProSiteProfiles Protein kinase domain profile. 159 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04211 506 SUPERFAMILY Concanavalin A-like lectins/glucanases 5 127 IPR013320 -
Trre12g04211 506 Gene3D Transferase(Phosphotransferase) domain 1 236 453 - -
Trre12g04211 506 Gene3D Phosphorylase Kinase; domain 1 125 235 - -
Trre12g04211 506 SUPERFAMILY Protein kinase-like (PK-like) 141 437 IPR011009 -
Trre12g04211 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Trre12g04211 506 Gene3D - 3 124 - -
Trre12g04211 506 PANTHER - 10 433 - -
Trre12g04211 506 CDD lectin_legume_LecRK_Arcelin_ConA 5 127 IPR001220 GO:0030246
Trre12g04211 506 SMART serkin_6 159 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04211 506 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524
Trre12g04211 506 FunFam L-type lectin-domain containing receptor kinase S.4 236 442 - -
Trre12g04211 506 Pfam Legume lectin domain 5 126 IPR001220 GO:0030246
Trre12g04211 506 Pfam Protein kinase domain 161 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04211 Trre-Chr12 57215710 57218981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04211 136 382 Receptor kinase-like Gene Family AT4G04960 59.839 4.97e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre12g04211 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04211 - - gmx:100804025 532.332