Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04210 ATGTCTCTTCTCTTAATCCTCAACATAACACTATTATTATTGTTTTCAGTTACACTTTCATCATCTTCAACTGAATTTGTCTATAACAGAAACTTCAACTCAACAAACATAAACATTTATGGAAATGCAACAATTCAAAACTCAATTCTAACTCTCACAAACCAAACATTCTTTTCAATTGGTCGTGCTTTTTACCCTCAAAAACTACCTACAAAACAAAACAAAAATTCTTCAATTTTTCTTCCATTTGCAACTTCTTTCATATTTTCAATTTCACCATGCAAAAATCTTCCAATTGCTCATGGTTTTGCTTTCATTTTCTCACCTTCAATGATCATCAATGGAGCACTATCAGGAAACTATCTTGGACTGTTTAACAGATCAAGTTCAGGTGATGATTCTAACCATGTTTATGCAGTTGAATTCGATGATTTTAGAAACGAAGAGTTTGATGAAGTTAATGATAATCATGTTGGTGTTGATTTGAATTCAATGGTTTCTATGTATTCCGAACCTGCTGAATTTTGGGGTGGAAAAAATGGTGAAAATTTAGAAAAATTGAAACTTTCTAGTGGTGAAAATTATCAAGTTTGGATTGAGTTTAGGGATTTTGAAATTAATGTTACTATCGCTCCGGCGGGGAAAAGAAAACCGAAAAAGCCTTTGATTAGTAAGCCAATTAATATTTCTAGGGTTTTCTTGGATGAAATGTATGTTGGATTTTCTGGATCAACTGGGAAAATGGTTGATACTTGTAGAATTTTAGCTTGGAGTTTTAGTCATACAAATTTTTCAATTGGTGATGCTTTGAATACTAAACATTTACCTAATTATGTGAATCCAAAGAAATTAATGAAGGAAGATGAAGAGGGAAAATTTGAAGATTGCAAATTGGAGTATTGGCCACATAAGATTAGCTATAAGGAGATTTGCGATGGAACGGGTGGATTTTGTGAAGAAAATGTGATAGGGATTGGAACAAGTGGGAAAATATACAAAGGAGTTTTGAAAGGAGGAGAAGAAGTCGCGGTGAAGAGATTCAATCACGATACTCAACATGGAATGAGAGGGTTTTTAGCAGAGATTTCGAGCCTAGGAAGAATGAAACATCGAAACTTGTTAGGTTTCAAAGGTTGGAGTAAAGGAAAAGGAGGGAAATTGATATTGGTTTATGATTACATGGAGAATGAGAGTTTAGACAAAAGAATCTTCGAGTGTGAAGAGACCAAGTTGCTTAATTGGGAACAAAGAATAAGAGTTTTGGAAAATGTAGCTAGTGGAGTTTTATATCTACATGAAGGTTGGGAATTTGAGGTTTTGCATAGAGACATAAAAGCAAGTAATGTACTACTTGACAAAGATATGAATGCAAGAATAGGTGATTTTGGACTTGCTAGGTTGCAGCATCAAGAACTTGTAACCGACACAACAAGAGTTGTAGGGACTTTAGGGTACATGGCACCAGAATTACTCAAAGTTGGTAAACCATCAACTGCAACCGATGTTTATAGTTTCAGAATATTGATTTTAGAAGTTGTTTGTGGTAGAAGACCAATTGTAATGGATGAGCCACCATTGGTTGAATTGGAATCTTCTCTTATGGAGAAAGGTGAATTAAGTAATGCAATCGATGAACGTTTGAAGGGTCAAATAGAGTGTAAATATAACACCGTGGTAGCCGAGAGATTGCTTCATTTGGGTTTGTTATGTGCTAGTTTTGACTCTTGTGTTAGGCCTACAATGAGACAGGTTGTGAAAGCTTTGGAAGGTGTAAAATGCACCGAGTGTAATGAAGAGTGTGTTCATGTGAGTCTTATCAGAAAAATAAACTCAAACTCAGCAGCATCTTGGTCTAAGAGTTCTACCGATTCCGCGCGTGTAAATTTTCCTACCCTTGATGACATTTTACCGTATAAATATTTTTCTGGAGATTCTTTAAGTGTGTCTTGTCTCAGCCTAGAGCCAATATCGGATTCTCTCTCAGAAGGAAGGTGA 1995 0.3529 MSLLLILNITLLLLFSVTLSSSSTEFVYNRNFNSTNINIYGNATIQNSILTLTNQTFFSIGRAFYPQKLPTKQNKNSSIFLPFATSFIFSISPCKNLPIAHGFAFIFSPSMIINGALSGNYLGLFNRSSSGDDSNHVYAVEFDDFRNEEFDEVNDNHVGVDLNSMVSMYSEPAEFWGGKNGENLEKLKLSSGENYQVWIEFRDFEINVTIAPAGKRKPKKPLISKPINISRVFLDEMYVGFSGSTGKMVDTCRILAWSFSHTNFSIGDALNTKHLPNYVNPKKLMKEDEEGKFEDCKLEYWPHKISYKEICDGTGGFCEENVIGIGTSGKIYKGVLKGGEEVAVKRFNHDTQHGMRGFLAEISSLGRMKHRNLLGFKGWSKGKGGKLILVYDYMENESLDKRIFECEETKLLNWEQRIRVLENVASGVLYLHEGWEFEVLHRDIKASNVLLDKDMNARIGDFGLARLQHQELVTDTTRVVGTLGYMAPELLKVGKPSTATDVYSFRILILEVVCGRRPIVMDEPPLVELESSLMEKGELSNAIDERLKGQIECKYNTVVAERLLHLGLLCASFDSCVRPTMRQVVKALEGVKCTECNEECVHVSLIRKINSNSAASWSKSSTDSARVNFPTLDDILPYKYFSGDSLSVSCLSLEPISDSLSEGR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04210 664 Pfam Protein kinase domain 319 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04210 664 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Trre12g04210 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Trre12g04210 664 Gene3D Transferase(Phosphotransferase) domain 1 394 611 - -
Trre12g04210 664 FunFam L-type lectin-domain containing receptor kinase S.4 394 600 - -
Trre12g04210 664 SUPERFAMILY Protein kinase-like (PK-like) 299 595 IPR011009 -
Trre12g04210 664 CDD lectin_legume_LecRK_Arcelin_ConA 24 260 IPR001220 GO:0030246
Trre12g04210 664 Gene3D Phosphorylase Kinase; domain 1 280 393 - -
Trre12g04210 664 Pfam Legume lectin domain 24 263 IPR001220 GO:0030246
Trre12g04210 664 PANTHER - 19 591 - -
Trre12g04210 664 ProSiteProfiles Protein kinase domain profile. 317 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04210 664 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 264 IPR013320 -
Trre12g04210 664 SMART serkin_6 317 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04210 664 Gene3D - 22 274 - -
Trre12g04210 664 FunFam L-type lectin-domain containing receptor kinase V.9 22 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04210 Trre-Chr12 57215710 57219311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04210 22 540 Receptor kinase-like Gene Family AT4G04960 50.360 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre12g04210 Pkinase 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04210 - - vum:124844866 932.554