Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04195 ATGAATGCATACTCCAATTCCAACAATATTATTCCATTCTCAACACCCTTTCTTAATCTTCCATCTCCATCTCCATCTCCTTCTCCACTTATTGTGCAACAAGACCACTCCATCATCGAATTCGACTCGCTCCACGGCACTCTATCTCAACTCAACAACTCCGAATTGAGCAGTGGTTATAGCAGCTATGGTGGATCACCTTCACCAAGTACTCCCATCAGCTTGATGCAGAGGAGTATTAGCAGTCATTCCCTTCATCACAATAATGGGACTCACCATCATCCCTTTTCTGCTTTTTTTGCTGAATTGCTTGAATCGGAAGATACTCCGGTGAGGAAAGTTTGCAGTACTGGCGACCTGCAGAGGATTAATGGAATGCAACATAATCATCATCATCATCATGTGGATAGTCCATTGTCTAGTGAAAGTAGTATGATCATAGAAGGTATGAGCAGAGTTTGTCCATATAGCCCAGAAGAGAAGAAAGTCAGAATTGAGAGATACAGAACTAAGAGAAATCAGAGGAATTTCAACAAGAAAATTAAGTATGTCTGCAGGAAGACATTGGCAGATAGGAGGCCACGAATCAGAGGACGGTTTGCGAGGAATGATGAAATTGATAAGAGTGCTAAAGTTGAGTGGAGCCACATTGGTGGTGGAGAAGAAGAGGATGGAGAAGATGAGAATTGGATCAATATATTTGATTCCATAGTTGCTGCAAATCTTGTTCATGATGAGTTTGAAGGCAGTTCCTCCTTTGGTCTATTGTATTAG 774 0.4147 MNAYSNSNNIIPFSTPFLNLPSPSPSPSPLIVQQDHSIIEFDSLHGTLSQLNNSELSSGYSSYGGSPSPSTPISLMQRSISSHSLHHNNGTHHHPFSAFFAELLESEDTPVRKVCSTGDLQRINGMQHNHHHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRTKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKSAKVEWSHIGGGEEEDGEDENWINIFDSIVAANLVHDEFEGSSSFGLLY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04195 257 ProSiteProfiles CCT domain profile. 161 203 IPR010402 GO:0005515
Trre12g04195 257 Pfam CCT motif 163 203 IPR010402 GO:0005515
Trre12g04195 257 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 29 212 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04195 Trre-Chr12 57019812 57022288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04195 157 217 C2C2-CO-like Transcription Factor Family AT5G15850 42.623 2.00e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g04195 CCT 2.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04195 - - gmx:100820236 273.092