Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04190 ATGGCAATTAAGGAAGAAGAAACTGGAACCGCCGCACAGAGAGCAGCAGAGTGGGGTTTGGTACTCACAACAGATGCTGAGACTGGGAAACCACAAGGAGTGGCAGTTCGAAACTCCGGAGATGATGAACCGGGTGGAAAATTTGCTTCTAAAAGAAACTCCGGTAGAGCTTCCGGTGACTCTTCCGATGGAGGTGAACGCGGAGGGATACCGAGAGTTTCGGAAGATTTGAAAGATGCTTTATCGGCTTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACTTCCAAAGAAGTCATAGGAAGAAACTGTCGATTTTTACAGGGTGCGGATACGGATCCGAATGATGTGGCAAAGATAAGAGAAGCATTGGAAACTGGGAATAGTTATTGTGGAAGGTTACTGAATTACAAGAAGGATGGAACTCCCTTTTGGAACCTTCTTACAATTTCACCAATCAAGGATAATGATGGCAATGTGCTCAAGTTAATTGGAATGTTGGTGGAGGTAAACAAACATACAGAGGGGTCCAAAGAGAAGAAGCTACGTCCAAATGGGTTGCCTGAATCTTTGATTCGATATGATGCTCGCCAGAAAGAGAAGGCTACATCTTCTGTATCTGAGTTACTATTCGCCATGAAACGTCCTCGTGCATTAAGCGAATCCGGACCCCGTCCCTTTATCAGAAAATCGGGAGGAGGTTCTGAAGAAGATGAAGAAGCAGAGAAAGCAGAACATAAATCAAGGAGAAATTCTGATAGTGTAGCTTCTTTTAGACTAAAATCACAAAGAAAAAGTAGAAGTTCAATGGAACGAATCAGCGAGCTACCTGAAAATCAACACAAAAACCCTCATCGCCATTCTTTCATGGGGTTCATGAGGAAAAGTCAGTCCATCGATGAAAACATCGATGGTGAAGACATTGTATATGAGAGCTCTGAGAGTGACCATGATGAGGGGACCGATAGTTTTGAATTTGATGACAAAGAAAAGCTAAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACTACACTTGAACGTATTGAGAAAAATTTTGTCATTACCGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATATAGCCGCGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGAAACTGTTAAAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACTGTGCAACTGATCAATTACACAAGAACTGGGAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCATAAGGGAGAAGTTCAATATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAATTGCATTCAAGAAGATACTGCAAAAGAGGGAGAACTATTGGTAAAAAAAACTGCGGAAAATGTTGGCGAGGCAGTGAGAGAACTTCCAGATGCGAATCAGAAACCAGATGATTTATGGATGAATCATTCAAAAGTGGTTCACCCCAAACCTCATAGGAAGGATGATGTTCCTTGGAAAGCAATCCAAAAGATTATAGAAAGTGGAGAACAAATAAGCCTAAAGCACTTCAGGCCAATTAAACCTTTGGGATCCGGAGACACCGGAAGTGTGCATCTGGTGGAGCTTGAAGGAACTGGTCAGTACTTTGCCATGAAGGCGATGGATAAGGGTGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAGAGAGAAATTCTTGACATGTTGGACCACCCTTTTCTGCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTATCCTGGTGGAGAACTATTTCTTCTTCTTGACCAACAACCAACAAAGGTTCTCAAGGAAGATGCTGTCAGATTTTATGCTGCTGAGGTACTAATTGCATTGGAGTACCTTCACTGTCAAGGCATAATTTATCGGGATTTAAAGCCGGAAAATGTGTTGATCCAAAGCAATGGCCATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTATTCTTCCAACTTCAGATGAAAAGAAGAAGAGGAAGAAAAAGAAGAAGAAGGGGCAACAAAAAACTCCAGAGGTTCCTATGTTTATGGCGGAACCAATGAGAGCGTCTAATTCTTTTGTTGGCACGGAAGAGTATATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCTGTAGATTGGTGGGCTCTAGGTATACTTCTATATGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGACAAAAGACATTTGCAAATATTCTTCATAAAGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCCTCAGGCAAAGCAGCTAATTTACCAATTGTTGCATAGAGATCCCAAAAATAGATTGGGTACACTTGAAGGAGCAAATGAAATTAAGAGTCATCCATTCTTCAAGAATGTCAATTGGGCACTAATTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTATCTTATTAGAAAATGATGAAAAGAAAGAAGCCAAAAATATTGACCCCGGCCTAGATGATTTACAAAAAAATATTTTCTGA 2694 0.4065 MAIKEEETGTAAQRAAEWGLVLTTDAETGKPQGVAVRNSGDDEPGGKFASKRNSGRASGDSSDGGERGGIPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDVAKIREALETGNSYCGRLLNYKKDGTPFWNLLTISPIKDNDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSVSELLFAMKRPRALSESGPRPFIRKSGGGSEEDEEAEKAEHKSRRNSDSVASFRLKSQRKSRSSMERISELPENQHKNPHRHSFMGFMRKSQSIDENIDGEDIVYESSESDHDEGTDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVKKIREAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIQEDTAKEGELLVKKTAENVGEAVRELPDANQKPDDLWMNHSKVVHPKPHRKDDVPWKAIQKIIESGEQISLKHFRPIKPLGSGDTGSVHLVELEGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDAVRFYAAEVLIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLILPTSDEKKKRKKKKKKGQQKTPEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPQAKQLIYQLLHRDPKNRLGTLEGANEIKSHPFFKNVNWALIRCMKPPELDAPILLENDEKKEAKNIDPGLDDLQKNIF 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04190 897 PANTHER FLIPPASE KINASE 1-RELATED 64 871 - -
Trre12g04190 897 SMART pac_2 150 192 IPR001610 -
Trre12g04190 897 SMART pac_2 433 475 IPR001610 -
Trre12g04190 897 ProSiteProfiles PAS repeat profile. 73 144 IPR000014 -
Trre12g04190 897 Gene3D Phosphorylase Kinase; domain 1 556 879 - -
Trre12g04190 897 ProSitePatterns Protein kinases ATP-binding region signature. 563 586 IPR017441 GO:0005524
Trre12g04190 897 FunFam Putative LOV domain-containing protein 87 243 - -
Trre12g04190 897 SUPERFAMILY PYP-like sensor domain (PAS domain) 372 471 IPR035965 -
Trre12g04190 897 FunFam LOV domain-containing protein 345 509 - -
Trre12g04190 897 FunFam LOV domain-containing protein 556 640 - -
Trre12g04190 897 Gene3D Transferase(Phosphotransferase) domain 1 641 875 - -
Trre12g04190 897 Gene3D PAS domain 345 509 - -
Trre12g04190 897 SMART serkin_6 557 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04190 897 CDD PAS 100 189 IPR000014 -
Trre12g04190 897 CDD STKc_phototropin_like 555 871 - -
Trre12g04190 897 MobiDBLite consensus disorder prediction 250 273 - -
Trre12g04190 897 NCBIfam PAS domain S-box protein 381 471 IPR000014 -
Trre12g04190 897 NCBIfam PAS domain S-box protein 100 193 IPR000014 -
Trre12g04190 897 ProSiteProfiles PAC domain profile. 147 201 IPR000700 -
Trre12g04190 897 MobiDBLite consensus disorder prediction 239 306 - -
Trre12g04190 897 ProSiteProfiles PAS repeat profile. 356 429 IPR000014 -
Trre12g04190 897 ProSiteProfiles Protein kinase domain profile. 557 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04190 897 Pfam Protein kinase domain 559 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04190 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672|GO:0006468
Trre12g04190 897 SUPERFAMILY Protein kinase-like (PK-like) 536 869 IPR011009 -
Trre12g04190 897 FunFam Putative LOV domain-containing protein 641 864 - -
Trre12g04190 897 CDD PAS 371 471 IPR000014 -
Trre12g04190 897 MobiDBLite consensus disorder prediction 24 72 - -
Trre12g04190 897 Pfam PAS domain 94 189 IPR000014 -
Trre12g04190 897 Pfam PAS domain 379 471 IPR000014 -
Trre12g04190 897 SMART pas_2 75 144 IPR000014 -
Trre12g04190 897 SMART pas_2 358 427 IPR000014 -
Trre12g04190 897 ProSiteProfiles PAC domain profile. 430 484 IPR000700 -
Trre12g04190 897 SUPERFAMILY PYP-like sensor domain (PAS domain) 94 186 IPR035965 -
Trre12g04190 897 Gene3D PAS domain 87 240 - -
Trre12g04190 897 MobiDBLite consensus disorder prediction 283 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04190 Trre-Chr12 56962264 56971589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04190 2 897 AGC Kinase Gene Family AT3G45780 72.777 0.0 1301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre12g04190 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04190 K20715 - gmx:100817565 1453.34