Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04189 ATGAATCTTCTAAAGAAATCTCCATCATCATCATCATCAACAACATCATCATCATCAACGACGAGACCATCATTTCCGAGGGATCCTCGCGGATCCCTCGAAGTATTCAATCCAACAAGCAACTCCAACTCACCGGTACGTTCTCCGTCAAACCTGAAAACTTGGACGGAAACAGAAGAGGTAGCAGCAAGAAACGAATTCTCCGATGAAGTCACCACCAACACTTCATGGATGGCAATTAAGGAAGAAGAAACTGGAACCGCCGCACAGAGAGCAGCAGAGTGGGGTTTGGTACTCACAACAGATGCTGAGACTGGGAAACCACAAGGAGTGGCAGTTCGAAACTCCGGAGATGATGAACCGGGTGGAAAATTTGCTTCTAAAAGAAACTCCGGTAGAGCTTCCGGTGACTCTTCCGATGGAGGTGAACGCGGAGGGATACCGAGAGTTTCGGAAGATTTGAAAGATGCTTTATCGGCTTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACTTCCAAAGAAGTCATAGGAAGAAACTGTCGATTTTTACAGGGTGCGGATACGGATCCGAATGATGTGGCAAAGATAAGAGAAGCATTGGAAACTGGGAATAGTTATTGTGGAAGGTTACTGAATTACAAGAAGGATGGAACTCCCTTTTGGAACCTTCTTACAATTTCACCAATCAAGGATAATGATGGCAATGTGCTCAAGTTAATTGGAATGTTGGTGGAGGTAAACAAACATACAGAGGGGTCCAAAGAGAAGAAGCTACGTCCAAATGGGTTGCCTGAATCTTTGATTCGATATGATGCTCGCCAGAAAGAGAAGGCTACATCTTCTGTATCTGAGTTACTATTCGCCATGAAACGTCCTCGTGCATTAAGCGAATCCGGACCCCGTCCCTTTATCAGAAAATCGGGAGGAGGTTCTGAAGAAGATGAAGAAGCAGAGAAAGCAGAACATAAATCAAGGAGAAATTCTGATAGTGTAGCTTCTTTTAGACTAAAATCACAAAGAAAAAGTAGAAGTTCAATGGAACGAATCAGCGAGCTACCTGAAAATCAACACAAAAACCCTCATCGCCATTCTTTCATGGGGTTCATGAGGAAAAGTCAGTCCATCGATGAAAACATCGATGGTGAAGACATTGTATATGAGAGCTCTGAGAGTGACCATGATGAGGGGACCGATAGTTTTGAATTTGATGACAAAGAAAAGCTAAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACTACACTTGAACGTATTGAGAAAAATTTTGTCATTACCGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATATAGCCGCGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGAAACTGTTAAAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACTGTGCAACTGATCAATTACACAAGAACTGGGAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCATAAGGGAGAAGTTCAATATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAATTGCATTCAAGAAGATACTGCAAAAGAGGGAGAACTATTGGTAAAAAAAACTGCGGAAAATGTTGGCGAGGCAGTGAGAGAACTTCCAGATGCGAATCAGAAACCAGATGATTTATGGATGAATCATTCAAAAGTGGTTCACCCCAAACCTCATAGGAAGGATGATGTTCCTTGGAAAGCAATCCAAAAGATTATAGAAAGTGGAGAACAAATAAGCCTAAAGCACTTCAGGCCAATTAAACCTTTGGGATCCGGAGACACCGGAAGTGTGCATCTGGTGGAGCTTGAAGGAACTGGTCAGTACTTTGCCATGAAGGCGATGGATAAGGGTGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAGAGAGAAATTCTTGACATGTTGGACCACCCTTTTCTGCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTATCCTGGTGGAGAACTATTTCTTCTTCTTGACCAACAACCAACAAAGGTTCTCAAGGAAGATGCTGTCAGATTTTATGCTGCTGAGGTACTAATTGCATTGGAGTACCTTCACTGTCAAGGCATAATTTATCGGGATTTAAAGCCGGAAAATGTGTTGATCCAAAGCAATGGCCATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTATTCTTCCAACTTCAGATGAAAAGAAGAAGAGGAAGAAAAAGAAGAAGAAGGGGCAACAAAAAACTCCAGAGGTTCCTATGTTTATGGCGGAACCAATGAGAGCGTCTAATTCTTTTGTTGGCACGGAAGAGTATATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCTGTAGATTGGTGGGCTCTAGGTATACTTCTATATGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGACAAAAGACATTTGCAAATATTCTTCATAAAGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCCTCAGGCAAAGCAGCTAATTTACCAATTGTTGCATAGAGATCCCAAAAATAGATTGGGTACACTTGAAGGAGCAAATGAAATTAAGAGTCATCCATTCTTCAAGAATGTCAATTGGGCACTAATTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTATCTTATTAGAAAATGATGAAAAGAAAGAAGCCAAAAATATTGACCCCGGCCTAGATGATTTACAAAAAAATATTTTCTGA 2925 0.4099 MNLLKKSPSSSSSTTSSSSTTRPSFPRDPRGSLEVFNPTSNSNSPVRSPSNLKTWTETEEVAARNEFSDEVTTNTSWMAIKEEETGTAAQRAAEWGLVLTTDAETGKPQGVAVRNSGDDEPGGKFASKRNSGRASGDSSDGGERGGIPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDVAKIREALETGNSYCGRLLNYKKDGTPFWNLLTISPIKDNDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSVSELLFAMKRPRALSESGPRPFIRKSGGGSEEDEEAEKAEHKSRRNSDSVASFRLKSQRKSRSSMERISELPENQHKNPHRHSFMGFMRKSQSIDENIDGEDIVYESSESDHDEGTDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVKKIREAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIQEDTAKEGELLVKKTAENVGEAVRELPDANQKPDDLWMNHSKVVHPKPHRKDDVPWKAIQKIIESGEQISLKHFRPIKPLGSGDTGSVHLVELEGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDAVRFYAAEVLIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLILPTSDEKKKRKKKKKKGQQKTPEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPQAKQLIYQLLHRDPKNRLGTLEGANEIKSHPFFKNVNWALIRCMKPPELDAPILLENDEKKEAKNIDPGLDDLQKNIF 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04189 974 PANTHER FLIPPASE KINASE 1-RELATED 526 948 - -
Trre12g04189 974 FunFam Putative LOV domain-containing protein 164 320 - -
Trre12g04189 974 Gene3D PAS domain 164 317 - -
Trre12g04189 974 ProSitePatterns Protein kinases ATP-binding region signature. 640 663 IPR017441 GO:0005524
Trre12g04189 974 FunFam LOV domain-containing protein 633 717 - -
Trre12g04189 974 SMART pas_2 152 221 IPR000014 -
Trre12g04189 974 SMART pas_2 435 504 IPR000014 -
Trre12g04189 974 MobiDBLite consensus disorder prediction 34 58 - -
Trre12g04189 974 Pfam Protein kinase domain 636 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04189 974 MobiDBLite consensus disorder prediction 1 71 - -
Trre12g04189 974 ProSiteProfiles PAS repeat profile. 433 506 IPR000014 -
Trre12g04189 974 MobiDBLite consensus disorder prediction 327 350 - -
Trre12g04189 974 MobiDBLite consensus disorder prediction 1 26 - -
Trre12g04189 974 CDD STKc_phototropin_like 632 948 - -
Trre12g04189 974 SUPERFAMILY Protein kinase-like (PK-like) 613 946 IPR011009 -
Trre12g04189 974 ProSiteProfiles PAC domain profile. 224 278 IPR000700 -
Trre12g04189 974 SMART pac_2 227 269 IPR001610 -
Trre12g04189 974 SMART pac_2 510 552 IPR001610 -
Trre12g04189 974 FunFam Putative LOV domain-containing protein 718 941 - -
Trre12g04189 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Trre12g04189 974 Gene3D PAS domain 422 586 - -
Trre12g04189 974 CDD PAS 177 266 IPR000014 -
Trre12g04189 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 449 548 IPR035965 -
Trre12g04189 974 CDD PAS 448 548 IPR000014 -
Trre12g04189 974 SMART serkin_6 634 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04189 974 MobiDBLite consensus disorder prediction 316 383 - -
Trre12g04189 974 Pfam PAS domain 456 548 IPR000014 -
Trre12g04189 974 Pfam PAS domain 171 266 IPR000014 -
Trre12g04189 974 ProSiteProfiles Protein kinase domain profile. 634 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04189 974 Gene3D Phosphorylase Kinase; domain 1 633 956 - -
Trre12g04189 974 MobiDBLite consensus disorder prediction 101 149 - -
Trre12g04189 974 NCBIfam PAS domain S-box protein 458 548 IPR000014 -
Trre12g04189 974 NCBIfam PAS domain S-box protein 177 270 IPR000014 -
Trre12g04189 974 MobiDBLite consensus disorder prediction 360 381 - -
Trre12g04189 974 ProSiteProfiles PAS repeat profile. 150 221 IPR000014 -
Trre12g04189 974 FunFam LOV domain-containing protein 422 586 - -
Trre12g04189 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 171 263 IPR035965 -
Trre12g04189 974 Gene3D Transferase(Phosphotransferase) domain 1 718 952 - -
Trre12g04189 974 ProSiteProfiles PAC domain profile. 507 561 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04189 Trre-Chr12 56962033 56971589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04189 8 974 AGC Kinase Gene Family AT3G45780 68.473 0.0 1324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre12g04189 Pkinase 2.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04189 K20715 - gmx:100817565 1494.95