Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04188 ATGTCACCAAGTTTCATCTTCGAAGCTGCCAGCGACGAAGAAATCGAATTCACCGAACACGAATCAGACGAAGAAGAATCACAATCACAATCAGAATCAGAAGGAGGAGAATCAGAATCAGAAAATGAGCGCACAGAACCGCGAGTTTCAAAGAAGAAAACAGTGTCTCCATGGGATTTCACCAAATACACTGAATCAGTTGCTGAAGAACACGCTCGCAGAAGTACAACATCAGTAGACGATAAAATTTATGCCGTCAGACAACGTTCAGCGCCGGTTGTTGCTTTGCCTGACTCCGACGACGATAGTGGCTCTGACGCGGAAGCTGATAAACAAGAAGATTATAAAGAAGAAGAAGAAGATGAAGAAGAGGGTAATGCTGGCGACAAAAAGTCCTTTTTTGCTCCTTCTGATGGAACATCTTTCAGTGCTGATTCGTTCTTGCAACTCAATTTGTCTCGCCCTTTACTAATGGCTTGTGCGGACTTGGGGTTTACTAAACCAACACCAATTCAGGCGGCTTGCATACCATTAGCATTGACTGGTCGTGATATTTGTGGAAGTGCCATTACTGGATCGGGAAAGACTGCTGCCTTTGCACTACCTACTTTAGAGAGGTTGCTTTACCGTCCAAAACGCATGAATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCACAGTATGATTGAGAAGCTTGCTATTCATACTGATATAAGGTGTTGCCTGATTGTTGGTGGTCTGTCAACAAAGGAGCAAGAGGCTGCATTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGGCGCATGATAGACCATTTACGCAATTCTATGTCAGTGGACTTGGATGATCTTTCTGTTTTGATCCTTGATGAAGCAGATCGTCTTTTGGAGCTAGGATTTAGTGCTGAAATTCAGGAACTTGTTCGATTGTGTCCCAAAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACCGAGGAGGTTAATGATCTTATTACACTTTCCCTATCAAAACCCCTGCGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCATCCTTGACTGAAGAGGTGGTTAGATTAAGAAACATGCGTGAAGTGAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCAAAAGTTATCATTTTCAGTGGAACCAAGCAAGCTGCACATAGGTTGAGGATTATATTTGGATTAGCTGGATTGAAAGCTGCTGAGTTTCATGGAAATCTTACTCAGGCCCAACGTCTTGATGCTTTGGACCAATTCAGGAAGCAGCAAGTGGATTTTTTGATTGCAACTGATGTGGCTGCTCGTGGGCTTGACATTATTGGTGTTCAAACAGTTATAAATTTTGCATGTCCACGCGATCTCACCAGCTATGTTCATCGGGTGGGTCGTACTGCAAGAGCTGGAAGAGCAGGATCTGCTATTACATTTGTTACCGATCGTGACCGATCACTTTTAAAATCTATTATAAAGAGGGCTGGTTCAAAGTTGAAAAAACGCACTGTTGCTGAGCAATCTATATTAAAATGGTCTCAAGTAATTGAGCAAATGGAGGATCAGATTTCTGAAGTACTTGAAGAAGAGAGGGAAGAAAGGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGAACATAGGGAAGATATCTACTCCCGCCCGAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGCTTTCGGCAAAAGCAGCAAAGGCATCCTTGGATAAGGAAGACGGTTCTTCTCGTAAGGTGCTTAGTGCCCAGCAAGCTGAAGACCTAAAATTGAAGGAAAAGAGGAAGCGGGAACGAGAGAAAAATTTGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGACGAGCAAGATGACAAACCAAGAGGTAAGGGGACAGATAAGAATGAAAAGGCTGGATTGACACTTGCTGATCTTGCTTACCGACGTGCAAAAGCAGTAAAGGCCACCAAGAGGGCACTAGACTCTGGCAAGATTGTGAAGAAGCCTCAAAAGAAATCTAATAAATCTAATCCTTCGCGAAAGCCTTCCTCTTCTAGGACAGAAGACATGCGGGAGGCATTCCAAAATGACATGAAGGATAAAAAACCAAAACAGAGAGGCATCGATAGAAATATTAATTTCATTGTTGATCGACTCATAAAAATGTCTTCTGTTTCTGTTCTGTGA 2265 0.4313 MSPSFIFEAASDEEIEFTEHESDEEESQSQSESEGGESESENERTEPRVSKKKTVSPWDFTKYTESVAEEHARRSTTSVDDKIYAVRQRSAPVVALPDSDDDSGSDAEADKQEDYKEEEEDEEEGNAGDKKSFFAPSDGTSFSADSFLQLNLSRPLLMACADLGFTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRMNAIRVLILTPTRELAAQVHSMIEKLAIHTDIRCCLIVGGLSTKEQEAALRTMPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVNDLITLSLSKPLRLSADPSAKRPASLTEEVVRLRNMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLRIIFGLAGLKAAEFHGNLTQAQRLDALDQFRKQQVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAITFVTDRDRSLLKSIIKRAGSKLKKRTVAEQSILKWSQVIEQMEDQISEVLEEEREERILRKAEMEATKAENMIEHREDIYSRPKRTWFVTEKEKKLSAKAAKASLDKEDGSSRKVLSAQQAEDLKLKEKRKREREKNLPRKKRRKLEAAREMLEDDEQDDKPRGKGTDKNEKAGLTLADLAYRRAKAVKATKRALDSGKIVKKPQKKSNKSNPSRKPSSSRTEDMREAFQNDMKDKKPKQRGIDRNINFIVDRLIKMSSVSVL 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04188 754 Gene3D - 95 352 IPR027417 -
Trre12g04188 754 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Trre12g04188 754 CDD DEADc_DDX27 156 351 - -
Trre12g04188 754 Pfam Helicase conserved C-terminal domain 382 485 IPR001650 -
Trre12g04188 754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 524 IPR001650 -
Trre12g04188 754 Coils Coil 609 629 - -
Trre12g04188 754 SMART ultradead3 164 365 IPR014001 -
Trre12g04188 754 MobiDBLite consensus disorder prediction 593 734 - -
Trre12g04188 754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 350 IPR014001 -
Trre12g04188 754 MobiDBLite consensus disorder prediction 101 125 - -
Trre12g04188 754 MobiDBLite consensus disorder prediction 631 663 - -
Trre12g04188 754 Pfam DEAD/DEAH box helicase 169 339 IPR011545 GO:0003676|GO:0005524
Trre12g04188 754 Gene3D - 364 736 IPR027417 -
Trre12g04188 754 SMART helicmild6 400 485 IPR001650 -
Trre12g04188 754 MobiDBLite consensus disorder prediction 676 694 - -
Trre12g04188 754 MobiDBLite consensus disorder prediction 12 32 - -
Trre12g04188 754 MobiDBLite consensus disorder prediction 37 55 - -
Trre12g04188 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 506 IPR027417 -
Trre12g04188 754 CDD SF2_C_DEAD 362 494 - -
Trre12g04188 754 MobiDBLite consensus disorder prediction 1 134 - -
Trre12g04188 754 MobiDBLite consensus disorder prediction 64 80 - -
Trre12g04188 754 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 296 304 IPR000629 -
Trre12g04188 754 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 107 703 - -
Trre12g04188 754 MobiDBLite consensus disorder prediction 708 734 - -
Trre12g04188 754 Coils Coil 523 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04188 Trre-Chr12 56950036 56957411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04188 100 502 Eukaryotic Initiation Factors Gene Family AT3G13920 32.512 7.54e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04188 K13181 - gmx:100791233 962.6