Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04187 ATGATTGAGAAGCTTGCTATATATACTGATATAAGGTGTTGCCTGATTGTTGGTGGTCTGTCAAAAAAGGAGCAAGAGGCTGCCTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGGCGCATGATAGACCATTTACGCAATTCTATGTCAGTGGATTTGGATGATCCTTCTGTTTTGATCCTTGATGAAGCAGATCGTCTTTTGGAGCTAGGATTTAGTGCTGAAATTCAGGAACTTGTTCGCGTGTGTCCCGAAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACCGAGGAGGTTGATGATCTTATTAAACTTTACCTATCAAATCCCATGCGTCTTTCCGCTGATCCATCTGCAAAACGGCCAGCATCCTTGACTGAGGAGTAA 396 0.4369 MIEKLAIYTDIRCCLIVGGLSKKEQEAALRTMPDIVVATPGRMIDHLRNSMSVDLDDPSVLILDEADRLLELGFSAEIQELVRVCPEKRQTMLFSATMTEEVDDLIKLYLSNPMRLSADPSAKRPASLTEE 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04187 131 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 62 70 IPR000629 -
Trre12g04187 131 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 131 - -
Trre12g04187 131 Gene3D - 1 123 IPR027417 -
Trre12g04187 131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 116 IPR027417 -
Trre12g04187 131 Pfam DEAD/DEAH box helicase 3 105 IPR011545 GO:0003676|GO:0005524
Trre12g04187 131 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 116 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04187 Trre-Chr12 56945051 56945779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04187 1 116 Eukaryotic Initiation Factors Gene Family AT1G72730 33.621 4.63e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04187 K13181 - gmx:100776684 226.098